genome.fa.s46.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397299.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_163.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  271445

Tables:   1   2   

This is table  2  of  2  ( 158 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205325--205773	170	2.6	168	84	4	535	33	13	13	39	1.84
205325--206217	171	5.2	172	76	3	491	32	13	13	37	1.84
207817--208427	170	3.6	168	75	7	437	33	13	12	37	1.82
209017--209458	169	2.6	167	83	5	528	42	11	14	31	1.81
210457--211195	171	4.3	170	78	7	681	38	13	14	31	1.85
218293--218774	171	2.8	171	75	3	441	33	11	16	36	1.85
221743--222015	147	1.9	147	82	3	352	38	13	16	32	1.87
221583--222183	318	1.9	318	81	4	739	35	14	16	32	1.90
221890--222269	171	2.2	171	80	6	437	35	15	16	32	1.90
222628--223192	171	3.3	169	80	3	621	36	13	15	32	1.87
224151--224633	171	2.8	170	76	4	436	36	16	11	33	1.85
224846--225797	171	5.6	170	82	2	940	36	13	15	31	1.87
229124--229532	169	2.4	170	75	4	410	34	15	15	31	1.89
233725--234042	172	1.9	171	81	2	395	30	15	16	34	1.90
235610--236033	172	2.5	170	83	4	509	37	15	13	33	1.87
236351--236664	170	1.9	159	84	3	335	30	15	16	33	1.90
235590--236700	171	6.6	170	71	6	628	34	14	14	32	1.86
238286--238709	171	2.5	171	76	4	408	38	13	13	31	1.83
240687--241604	171	5.4	169	75	7	699	32	12	13	39	1.82
249478--249984	172	3.0	168	77	9	504	39	14	11	34	1.83
249309--249983	342	2.0	341	80	3	766	38	14	11	33	1.83
251484--251910	171	2.5	170	78	2	469	33	11	12	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252524--253137	170	3.6	171	81	4	460	33	14	10	38	1.81
255287--255777	172	2.9	169	76	5	499	40	15	11	33	1.83
258426--258874	173	2.6	168	79	7	472	35	16	11	36	1.85
258381--258930	171	3.2	170	77	6	527	34	14	12	38	1.84
260152--260934	170	4.6	169	76	6	672	32	14	12	37	1.83
262892--263030	69	2.0	69	84	2	181	46	12	10	30	1.74
263676--264911	171	7.3	170	75	7	827	39	13	12	32	1.82
265109--266790	171	9.9	169	74	7	1115	37	13	13	33	1.84
266917--267425	171	3.0	168	74	7	499	38	15	13	30	1.86
267756--268196	171	2.6	170	79	5	379	37	14	13	31	1.86
268301--268834	171	3.1	169	80	5	545	32	14	15	37	1.88
268839--270094	171	7.3	171	79	6	1102	33	12	13	39	1.83
268839--270084	341	3.6	337	78	6	1131	34	12	13	39	1.83
268853--270131	512	2.5	513	78	9	1191	34	12	13	38	1.84
270145--271038	171	5.2	171	80	6	1006	35	14	12	38	1.84
270145--271035	340	2.6	339	85	4	1164	35	14	12	38	1.84

Tables:   1   2

The End!