genome.fa.s479.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397732.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1030.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21942

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--4044	171	23.7	169	71	8	1742	33	13	11	37	1.82
5--4044	341	11.8	332	71	11	1493	33	14	11	37	1.82
1561--4044	171	14.6	169	78	7	2181	34	14	12	38	1.84
2417--2459	21	2.0	21	81	0	50	46	16	11	25	1.80
1616--4044	341	7.1	341	78	7	2192	34	14	12	38	1.84
4397--4964	171	3.3	169	82	5	626	39	11	14	34	1.83
4695--5223	279	1.9	279	82	6	678	41	11	12	35	1.79
4968--5618	171	3.8	169	80	5	664	38	11	14	35	1.82
4968--5709	171	4.3	170	79	4	636	38	12	13	35	1.82
6180--6957	171	4.5	170	76	4	481	37	13	12	33	1.82
7669--9243	171	9.3	167	74	7	620	38	12	13	33	1.83
8123--9245	171	6.6	169	79	7	1007	38	12	13	34	1.83
8125--9243	341	3.3	335	78	7	1107	38	12	13	34	1.83
9928--10464	171	3.1	169	79	7	539	39	13	12	34	1.82
9928--10464	172	3.1	167	78	9	550	39	13	12	34	1.82
12250--13219	170	5.7	169	81	4	977	40	12	13	34	1.82
13364--13928	171	3.3	168	78	4	512	41	12	12	33	1.80
14654--14982	170	2.0	161	81	3	304	39	13	12	31	1.82
14120--17951	341	11.2	338	75	8	2024	38	12	14	33	1.83
15149--15459	160	2.0	150	79	9	322	36	11	14	34	1.83
15775--17794	172	11.8	170	75	7	923	38	12	14	34	1.83
14120--17982	171	22.7	170	76	5	2741	37	12	14	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18262--20022	170	10.5	167	72	12	852	34	14	12	38	1.84
18887--20015	171	6.6	168	80	5	977	33	14	12	39	1.84
18884--20011	341	3.3	335	80	5	1131	33	14	12	39	1.83
20415--21311	171	5.3	172	77	6	736	33	14	13	38	1.84
20418--21187	341	2.3	338	79	6	842	33	13	13	39	1.83
21605--21648	22	2.0	22	82	8	54	31	2	6	59	1.36
21434--21942	170	3.0	170	80	4	524	34	14	11	39	1.82

Tables:   1

The End!