genome.fa.s4803.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018402056.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5153.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6162

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47--2674	171	15.4	171	79	2	2387	34	13	12	38	1.82
36--2671	341	7.7	341	78	5	2282	34	13	12	38	1.82
47--2674	512	5.1	512	80	3	2477	34	13	12	38	1.82
1--2671	683	3.9	677	78	6	2474	34	13	12	38	1.82
2955--3988	170	6.1	167	75	6	609	34	14	12	37	1.83
3181--3988	341	2.4	339	79	5	831	34	14	12	37	1.83
4446--6162	171	10.1	169	77	5	1526	34	13	13	38	1.83
4467--6162	511	3.3	506	81	5	1799	34	12	13	38	1.83
4446--6162	682	2.5	681	80	5	1835	34	13	13	38	1.83

Tables:   1

The End!