genome.fa.s50.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397303.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_523.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  201800

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
810--840	15	2.1	15	100	0	62	74	0	0	25	0.82
7272--7335	33	2.0	33	93	3	112	37	17	4	40	1.70
19131--19188	22	2.6	22	91	0	98	36	29	12	22	1.90
19376--19495	63	1.9	63	80	0	141	32	15	29	22	1.95
20962--21002	21	2.0	21	90	0	64	19	36	21	21	1.95
20920--21010	43	2.1	44	83	4	112	16	28	29	25	1.97
20991--21124	23	5.9	23	71	0	81	14	26	32	26	1.95
21387--21454	23	3.0	23	77	0	82	17	25	33	23	1.96
21361--21468	46	2.4	45	84	4	137	15	25	31	26	1.96
45177--45232	20	2.8	20	91	0	85	64	10	0	25	1.26
45169--45228	20	2.9	21	80	5	68	65	10	0	25	1.24
45193--45231	12	3.6	12	74	25	50	71	10	0	17	1.12
49042--49121	29	2.8	29	84	3	90	40	12	10	37	1.77
58611--58671	24	2.3	26	81	10	72	34	34	13	18	1.89
65488--65537	19	2.7	18	93	6	91	46	0	0	54	1.00
67539--67584	9	4.9	9	82	10	56	19	10	13	56	1.66
67538--67575	20	1.9	20	88	0	58	18	10	13	57	1.63
99216--99250	17	2.1	17	94	0	61	42	8	22	25	1.82
101818--102201	80	4.8	79	80	6	409	32	11	22	33	1.90
101828--102174	160	2.2	160	86	2	464	31	11	23	33	1.90
103291--103337	23	2.0	24	95	4	87	0	42	17	40	1.49
103291--103337	12	4.0	12	94	5	87	0	42	17	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105726--105798	36	2.0	36	100	0	146	39	2	35	21	1.68
108178--108362	35	5.3	35	83	6	234	45	14	8	31	1.75
108178--108335	71	2.2	70	85	5	228	44	14	9	31	1.77
110165--110192	14	2.0	14	100	0	56	28	21	7	42	1.79
115473--115601	36	3.6	36	89	1	197	45	16	7	30	1.75
124330--124372	19	2.3	19	96	4	79	51	0	4	44	1.22
145642--145681	21	1.9	21	94	0	71	17	0	35	47	1.48
149830--149881	23	2.1	25	86	10	72	40	23	13	23	1.89
157497--157540	22	2.0	21	86	4	61	22	22	11	43	1.85
160368--160417	24	2.0	25	85	11	68	38	14	20	28	1.91
161311--161398	35	2.5	35	92	0	140	38	9	10	42	1.71
161339--161409	35	2.0	35	91	0	115	39	9	11	39	1.74
161417--161534	35	3.3	35	79	3	128	31	6	13	48	1.69
161284--161548	137	2.0	133	85	3	359	36	7	12	44	1.69
164841--167416	172	15.0	171	78	5	2350	37	12	14	36	1.84
164840--167416	343	7.5	341	79	5	2429	37	12	14	36	1.84
164840--167416	856	3.0	851	79	6	2387	37	12	14	36	1.84
167569--167883	172	1.8	172	81	4	393	37	11	14	36	1.83
168560--170878	171	13.5	169	76	5	1834	36	11	15	35	1.84
171566--174267	172	15.7	171	77	4	2346	36	12	13	36	1.83
171566--174267	343	7.9	341	77	5	2277	36	12	13	36	1.83
174377--177933	172	20.8	171	75	7	2595	35	14	13	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174377--177933	343	10.4	339	76	6	2650	35	14	13	36	1.85
178048--178762	171	4.2	169	76	8	576	35	14	13	36	1.85
178954--182095	172	18.4	171	74	5	2043	35	14	12	35	1.83
178954--182095	343	9.2	341	74	5	2076	35	14	12	35	1.83
182413--182820	171	2.4	171	76	8	416	39	11	12	36	1.80
182202--182952	172	4.4	173	74	8	581	36	11	14	36	1.83
182956--184169	172	7.1	172	76	6	951	36	12	14	36	1.84
182956--184163	344	3.5	339	78	7	1048	36	12	14	36	1.84
184270--189109	171	28.2	169	75	5	3536	36	13	14	35	1.85
184270--189109	343	14.1	341	75	6	3507	36	13	14	35	1.85
184270--189106	514	9.4	503	75	8	2572	36	13	14	35	1.85
184270--189109	857	5.7	857	75	7	1951	36	13	14	35	1.85
193107--198816	171	33.5	170	77	6	4843	35	14	13	36	1.85
193143--198816	341	16.6	338	77	6	4829	35	14	13	36	1.85
198267--198814	172	3.2	169	80	5	507	36	14	11	35	1.83
198969--199977	171	5.9	170	77	6	824	36	14	12	36	1.85
199866--200094	121	1.9	121	85	1	318	41	19	12	27	1.87
199705--200269	292	1.9	291	84	5	748	37	16	13	32	1.87
199444--200610	634	1.8	632	80	8	1395	35	15	13	35	1.86
199985--200964	171	5.7	169	76	8	718	35	14	13	36	1.85

Tables:   1

The End!