genome.fa.s53.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397306.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_17.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156157

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2204--2541	171	2.0	171	83	9	431	35	14	13	36	1.86
2853--3210	171	2.1	169	82	9	417	35	10	12	41	1.77
5145--6244	172	6.4	167	77	7	885	34	13	11	41	1.80
6326--6640	171	1.9	169	79	5	366	34	10	15	39	1.81
6796--9981	171	18.7	167	74	7	1830	34	13	11	38	1.82
6803--9958	341	9.3	339	76	6	2016	34	13	11	38	1.82
6946--9991	511	6.0	506	77	6	2319	34	13	11	38	1.82
13656--15066	171	8.3	171	75	7	1088	35	13	12	39	1.82
13657--15066	341	4.1	340	77	7	1278	35	13	12	39	1.82
15212--15576	171	2.1	171	81	4	414	32	12	13	40	1.83
15721--16104	170	2.3	170	80	5	445	40	13	11	35	1.80
17717--18042	171	1.9	171	83	5	417	38	9	14	37	1.79
22720--23135	170	2.4	169	80	3	449	41	12	11	34	1.79
25812--26639	171	4.9	168	71	7	451	39	12	13	32	1.81
27118--27537	170	2.5	170	77	4	427	39	11	13	34	1.80
27736--28918	171	6.9	171	71	6	428	38	12	11	34	1.80
29024--31360	171	13.7	169	76	8	1750	35	12	12	39	1.82
29024--36681	342	22.7	341	71	9	3177	34	12	12	38	1.82
29024--36661	513	15.1	512	71	10	2816	34	12	12	38	1.82
31936--32648	170	4.2	170	74	4	521	33	13	12	38	1.82
32661--36759	171	24.1	172	70	10	1250	34	13	12	38	1.82
32687--35785	341	9.1	343	73	10	1147	35	12	12	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33858--35510	321	4.9	324	77	9	1326	34	13	12	40	1.81
33717--35682	493	3.9	492	78	10	1418	34	13	12	39	1.82
34175--36759	171	15.1	171	74	6	1745	34	13	12	38	1.83
35796--36095	164	1.8	162	80	9	358	33	13	14	39	1.85
39570--39989	171	2.5	168	77	8	393	33	13	13	40	1.83
42763--44211	342	4.2	339	77	3	1316	33	12	13	39	1.82
42763--44462	170	10.0	170	74	6	1123	33	12	13	39	1.82
45021--47047	171	11.9	170	72	8	748	34	13	11	37	1.81
45735--46437	339	2.1	337	80	8	752	37	12	10	39	1.78
46064--46437	167	2.2	172	80	9	430	38	11	9	40	1.75
46561--46875	169	1.9	171	83	2	420	35	13	12	39	1.81
45130--46875	170	10.3	170	73	6	428	35	13	11	37	1.81
47628--48674	171	6.2	171	75	4	859	34	13	13	36	1.83
47628--48674	170	6.2	170	75	5	823	34	13	13	36	1.83
48685--49212	171	3.1	166	78	8	533	34	14	12	39	1.83
49552--50598	340	3.1	338	80	4	1040	37	12	13	36	1.83
49547--50637	171	6.4	171	76	5	902	37	12	13	36	1.83
50679--51975	170	7.6	170	75	6	881	39	12	13	34	1.82
52110--52788	171	4.0	170	75	7	491	37	11	14	33	1.82
53697--54934	171	7.3	171	75	6	865	38	12	13	34	1.83
53757--54933	341	3.5	337	79	4	1141	38	12	13	34	1.83
53775--54954	512	2.3	510	78	7	1162	39	12	13	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55844--56655	171	4.8	166	73	8	519	35	13	11	39	1.81
55797--56655	342	2.5	338	79	6	835	36	12	12	38	1.81
55536--56620	513	2.1	502	77	7	1046	35	12	12	39	1.80
61800--63964	171	12.7	170	73	5	1364	34	12	11	38	1.80
64962--66651	171	10.0	169	72	6	1029	37	12	12	34	1.82
64962--66649	341	5.0	341	77	4	1473	37	12	12	34	1.82
67085--67403	170	1.9	170	81	3	392	32	14	12	40	1.83
71886--72266	169	2.2	171	81	6	443	40	12	11	35	1.80
72379--72918	171	3.2	169	73	5	485	34	11	13	38	1.81
76162--76934	343	2.3	340	77	5	790	41	12	11	33	1.79
78261--78820	171	3.3	169	72	8	468	39	14	11	33	1.83
81565--90309	341	25.6	342	76	5	6176	38	12	13	33	1.83
81565--90301	171	51.2	169	75	6	5403	38	12	13	33	1.83
90573--90891	171	1.9	169	80	3	381	33	13	15	37	1.86
91058--91395	171	2.0	171	84	5	443	33	16	13	35	1.88
91956--92866	171	5.4	171	79	6	810	33	14	12	38	1.85
92221--92847	338	1.8	342	85	3	888	32	15	13	39	1.86
93334--93751	171	2.5	171	81	4	479	35	14	11	38	1.83
93334--94063	170	4.3	171	74	6	482	34	14	11	39	1.81
93489--94153	340	2.0	329	77	10	661	35	14	10	38	1.81
93560--94310	340	2.2	340	79	5	802	34	15	12	36	1.84
94676--96355	171	9.8	169	71	6	901	33	13	12	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94676--96278	343	4.7	342	75	5	1227	33	13	12	38	1.83
95053--96372	685	1.9	681	81	5	1599	34	13	12	38	1.84
98207--99133	171	5.4	171	78	5	446	33	14	13	38	1.85
98058--99027	342	2.8	342	78	4	836	32	13	13	40	1.84
99452--103734	171	25.1	171	74	4	3069	33	13	12	38	1.84
101536--101562	10	2.7	10	100	0	54	25	33	18	22	1.97
104228--106253	171	12.0	168	73	7	1257	34	14	12	38	1.83
104228--106253	342	6.0	341	77	7	1532	34	14	12	38	1.83
105045--106253	510	2.4	510	80	6	1253	34	15	12	38	1.84
106390--106780	171	2.3	169	79	5	403	33	13	10	42	1.79
109868--110313	177	2.6	177	79	6	473	41	11	12	34	1.79
109582--110861	171	7.4	170	74	6	862	37	10	13	35	1.80
111076--111399	171	1.9	171	82	2	409	37	14	12	35	1.84
117560--118008	168	2.7	167	77	7	433	37	14	10	38	1.80
118483--118806	169	1.9	170	82	3	411	35	11	10	41	1.77
119468--120891	171	8.3	170	76	5	947	34	13	12	37	1.83
119465--120675	342	3.5	340	74	6	1066	33	14	12	37	1.83
119698--120837	513	2.2	512	79	4	1186	34	13	12	37	1.83
120778--120982	113	1.8	113	84	2	286	33	11	9	45	1.73
120888--121639	171	4.4	168	80	7	757	34	14	11	40	1.81
120888--121639	342	2.2	339	81	6	908	34	14	11	40	1.81
123015--124384	171	8.0	170	76	6	1189	35	12	11	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125002--132125	171	41.7	171	77	5	5332	34	13	12	38	1.82
132234--134126	171	11.1	169	71	7	953	33	13	12	38	1.81
132503--133490	513	1.9	511	79	4	1103	34	13	11	39	1.81
133008--133643	343	1.9	342	80	4	764	34	13	12	39	1.83
135869--136465	171	3.5	170	81	5	609	34	13	11	40	1.81
136481--137075	171	3.5	168	83	3	706	33	13	12	40	1.82
135989--136942	492	1.9	492	83	3	1213	34	14	11	40	1.82
137363--137691	163	2.0	162	84	5	423	34	13	13	39	1.84
138288--140019	171	10.2	169	79	5	1567	38	12	14	34	1.84
138288--140019	342	5.1	342	80	4	1838	38	12	14	34	1.84
140260--140980	341	2.1	340	79	6	778	39	12	13	33	1.83
140260--140984	170	4.2	171	77	6	635	39	12	13	33	1.83
141244--141696	170	2.7	172	83	2	556	38	12	13	35	1.83
141839--142316	264	1.8	264	82	2	611	34	15	11	38	1.84
142071--142438	171	2.1	172	80	4	411	35	15	12	36	1.85
143099--152459	171	55.0	171	77	5	7186	34	13	12	38	1.83
143099--152459	341	27.5	341	77	5	7138	34	13	12	38	1.83
149866--150190	161	2.0	161	81	4	379	34	14	12	39	1.83
152562--153358	171	4.7	171	80	4	844	37	12	14	34	1.85
153798--154502	171	4.1	170	79	4	697	38	13	13	33	1.84
153798--154502	341	2.1	340	83	3	882	38	13	13	33	1.84
154626--155025	172	2.3	173	82	2	475	37	12	12	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155128--155500	171	2.2	161	75	12	320	33	12	10	40	1.78

Tables:   1

The End!