genome.fa.s5326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018402579.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_5651.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6271

Tables:   1   

This is table  1  of  1  ( 6 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3673	171	21.6	171	81	4	3739	33	13	13	39	1.84
1--3673	341	10.8	341	81	5	3665	33	13	13	39	1.84
1--3673	512	7.2	513	80	5	3677	33	13	13	39	1.84
3920--6271	171	13.8	171	78	3	2165	32	13	13	37	1.84
3920--6271	511	4.6	505	78	7	1969	32	13	13	37	1.84
3932--6271	682	3.4	672	78	6	2035	32	13	13	37	1.85

Tables:   1

The End!