genome.fa.s54.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397307.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_743.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128450

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1561	171	9.2	170	79	5	1441	35	13	13	38	1.84
1--8996	511	17.6	502	72	9	3850	34	12	13	37	1.83
1--8942	682	13.1	681	73	10	2455	34	12	13	37	1.83
1708--8995	341	21.5	341	76	7	5603	35	13	13	38	1.83
3212--3250	21	1.9	20	84	5	51	41	10	17	30	1.83
1708--8995	171	43.1	170	76	8	5083	35	13	13	38	1.83
4821--5090	144	1.9	144	82	4	339	37	9	13	39	1.78
4943--6364	170	8.3	170	79	5	1167	35	12	13	39	1.82
6212--6514	155	2.0	155	81	5	362	36	14	14	34	1.87
9033--9448	171	2.4	170	80	7	468	38	13	11	36	1.81
9052--9927	438	2.0	439	82	4	1063	36	14	12	36	1.85
9508--10228	342	2.1	339	79	7	780	35	14	14	36	1.86
9483--10258	171	4.5	170	77	8	679	35	14	14	36	1.86
10987--11419	172	2.5	169	87	5	618	35	11	12	40	1.79
11419--34402	171	134.1	170	76	6	13932	34	13	13	37	1.83
18187--18265	40	2.0	40	97	0	149	31	17	10	40	1.83
34749--37595	171	16.7	171	78	5	2354	34	12	13	39	1.83
34945--36602	674	2.4	670	78	7	1587	34	12	13	39	1.83
37794--39101	171	7.7	170	81	4	1292	35	13	13	37	1.84
39352--40001	172	3.8	171	79	6	665	34	12	13	40	1.82
39305--40001	171	4.1	168	78	5	612	34	12	13	40	1.82
39305--39985	343	2.0	342	81	2	785	33	12	13	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39759--40300	299	1.8	299	82	6	713	32	12	12	43	1.79
40009--40638	171	3.7	170	80	7	641	32	12	13	42	1.81
39363--41100	641	2.7	640	84	3	2114	33	13	12	40	1.82
40517--40755	128	1.9	128	82	0	307	31	15	10	42	1.81
40644--41105	171	2.7	169	79	4	482	34	14	11	38	1.83
40184--41576	472	3.0	466	81	4	1610	34	13	12	39	1.83
40988--41227	128	1.9	129	80	6	290	32	16	11	40	1.84
41179--45342	171	24.4	172	78	6	3429	34	12	13	38	1.83
41111--45996	514	9.6	511	78	5	4208	34	12	13	38	1.83
41111--45992	685	7.2	677	78	6	3874	34	12	13	38	1.83
42822--42860	21	1.9	21	89	5	62	38	10	15	35	1.81
41179--45996	171	28.3	165	75	8	2002	33	12	13	38	1.83
46528--49949	171	20.1	171	79	4	3068	34	13	13	38	1.84
49957--50368	174	2.4	170	81	5	422	36	13	11	37	1.82
50000--50380	174	2.2	171	81	6	446	37	12	12	38	1.81
49531--50892	471	2.9	462	80	6	1338	33	13	12	40	1.82
50296--50535	126	1.9	126	82	5	297	35	13	9	42	1.76
50422--52526	171	12.4	168	78	6	1671	34	14	13	37	1.86
52558--55292	171	15.9	169	74	10	1834	34	12	13	38	1.83
52522--55442	343	8.6	340	76	9	2133	34	12	13	38	1.83
51595--53482	960	2.0	961	79	5	2109	35	14	13	35	1.86
52524--55292	514	5.4	508	76	10	2217	34	12	13	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54517--54564	20	2.4	20	100	0	96	37	8	6	47	1.59
54623--55298	341	2.0	340	81	3	761	35	12	13	38	1.83
61148--61778	170	3.7	169	76	6	591	33	12	13	40	1.82
61657--61893	128	1.9	128	85	1	332	32	14	10	42	1.80
61789--62227	172	2.6	171	82	1	513	34	14	12	38	1.84
61359--62439	471	2.3	467	80	3	1157	33	13	13	40	1.83
62255--66505	171	24.8	170	73	6	2184	33	13	12	38	1.82
62255--66492	513	8.2	508	74	6	2505	33	13	12	38	1.82
63276--63318	21	2.0	21	86	0	59	41	18	16	23	1.89
65176--65214	20	1.9	19	85	10	51	38	17	15	28	1.91
65539--66470	509	1.8	509	80	4	1083	34	14	12	39	1.83
66785--67705	170	5.4	169	76	5	667	32	13	13	38	1.84
68844--68873	15	1.9	16	93	6	53	33	13	16	36	1.88
70127--76463	342	18.6	340	77	6	4861	35	13	12	38	1.83
70128--76459	171	37.2	171	75	8	4269	35	13	12	38	1.83
74403--74809	161	2.5	161	80	7	417	36	14	12	36	1.84
77235--77277	22	2.0	22	90	0	68	9	16	32	41	1.80
77260--77489	69	3.3	69	85	1	316	8	16	19	56	1.65
81394--81438	15	3.0	15	83	0	54	17	15	8	57	1.63
84367--88915	171	26.5	170	75	9	2720	38	12	14	34	1.84
84367--93949	342	28.1	343	74	7	6407	38	12	13	34	1.83
84378--93886	513	18.6	509	74	9	4965	38	12	13	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88796--89052	137	1.9	137	81	4	313	41	10	11	36	1.76
88933--93949	171	29.5	171	77	5	4100	38	12	13	34	1.82
93391--93682	160	1.8	161	81	8	362	42	10	14	32	1.80
97534--97643	35	3.1	35	90	0	175	24	12	29	33	1.92
97932--101899	171	23.6	170	76	9	2869	38	11	15	34	1.84
97932--101885	341	11.7	339	75	10	2701	38	11	14	34	1.84
102691--102830	73	1.9	74	86	2	203	26	20	17	35	1.94
103132--105108	171	11.6	168	76	8	1521	39	12	13	34	1.83
103118--105108	341	5.8	338	77	7	1592	38	12	13	34	1.83
103112--105159	512	4.0	512	76	7	1828	38	12	14	34	1.84
107828--107870	18	2.4	18	84	7	52	69	0	2	27	1.00
114032--114287	129	2.0	130	81	1	300	35	15	13	35	1.86
114346--114676	110	3.0	110	88	0	491	38	16	13	30	1.88
114811--119850	171	29.6	170	77	7	3705	37	12	14	35	1.84
117596--119814	170	13.0	169	78	5	1823	37	12	14	34	1.84
121136--121724	315	1.9	315	79	4	677	36	14	14	34	1.87
121451--125089	171	21.6	167	72	11	1878	38	13	13	34	1.84
121451--122777	170	7.8	170	74	10	894	39	12	13	34	1.83
125147--126419	171	7.5	171	77	5	1060	37	12	13	35	1.83
124721--125547	454	1.8	454	79	5	983	37	13	13	35	1.85
124522--125717	625	1.9	625	80	4	1385	36	13	14	35	1.85
125147--126419	342	3.7	340	78	6	1184	37	12	13	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124334--125927	796	2.0	796	79	5	1736	37	13	13	35	1.85
125146--126452	512	2.6	510	80	5	1282	37	12	13	35	1.83
126502--126945	171	2.6	171	78	3	403	39	13	11	35	1.81
126090--126891	439	1.8	440	81	4	992	38	12	12	36	1.81
126488--128155	170	9.9	169	74	11	1038	38	13	14	34	1.85

Tables:   1

The End!