genome.fa.s55.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397308.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_526.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111669

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--5416	341	15.9	340	76	6	3784	34	13	12	38	1.83
1--5416	171	31.8	169	75	6	3606	34	13	12	38	1.83
4--5416	512	10.6	509	76	5	3875	34	13	12	38	1.83
5984--8066	170	12.2	168	77	7	1686	34	14	12	38	1.84
13426--17131	171	21.9	168	69	8	1441	37	11	13	34	1.80
13426--13903	170	2.8	166	76	9	444	37	12	13	36	1.83
13773--14050	149	1.9	149	81	6	339	34	12	16	36	1.86
13431--14367	490	1.9	489	80	5	1072	37	12	14	35	1.83
13921--15310	170	8.2	166	72	10	690	39	11	13	35	1.81
15592--17128	341	4.5	335	77	7	968	38	11	13	35	1.82
17333--18141	343	2.4	341	82	2	948	40	11	13	34	1.80
17333--18187	341	2.5	342	81	3	916	41	11	12	33	1.79
18511--19077	170	3.3	171	75	5	464	38	11	14	35	1.83
18417--19115	171	4.1	171	75	6	558	37	13	14	34	1.84
26571--26604	8	4.2	8	84	0	50	61	0	38	0	0.96
26571--26623	24	2.2	24	83	12	65	60	0	37	1	1.08
43321--47164	171	22.5	170	78	4	3338	39	12	13	35	1.82
43772--43810	21	1.9	20	89	5	60	30	12	15	41	1.85
43772--43816	21	2.1	21	84	8	56	31	11	15	42	1.82
47326--47651	170	2.0	159	83	5	336	38	12	12	33	1.82
51610--51666	27	2.1	27	100	0	114	26	29	7	36	1.83
53406--53807	171	2.4	170	80	5	427	40	12	12	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57515--58885	171	8.0	169	74	10	1019	38	12	14	35	1.84
57871--58814	510	1.8	510	80	8	1134	38	12	14	34	1.83
69708--70014	170	1.8	170	82	4	395	32	12	14	40	1.83
75375--75745	170	2.2	168	80	7	417	37	11	15	36	1.82
76438--77506	171	6.3	170	73	6	694	36	13	10	36	1.80
76461--77506	340	3.1	339	72	4	974	36	13	10	36	1.80
90901--91804	171	5.3	171	78	6	791	34	13	11	39	1.82
91064--91712	337	1.9	338	83	4	826	34	13	12	39	1.82
92684--93436	165	4.5	164	75	5	562	33	12	11	41	1.79
92713--93432	336	2.1	335	80	2	793	34	12	11	41	1.78
92604--93436	170	4.9	171	75	5	660	34	12	11	40	1.80
94142--94593	171	2.6	169	80	6	448	36	14	12	37	1.84
96233--97479	170	7.4	166	76	10	903	39	12	13	34	1.82
96230--97479	340	3.7	336	78	9	1178	39	12	13	34	1.82
97285--97699	205	2.0	205	83	5	527	40	12	14	33	1.83
97559--98475	165	5.5	164	71	7	581	39	11	11	33	1.79
96951--98035	541	2.0	543	80	6	1232	39	12	12	34	1.80
97502--98475	336	2.9	331	76	4	747	39	12	12	33	1.80
99168--100976	171	10.6	171	75	6	1205	39	12	13	34	1.82
102088--102682	168	3.5	166	76	10	449	38	12	13	36	1.81
102838--102873	18	2.0	18	88	0	54	61	0	5	33	1.19
110725--111285	168	3.3	167	75	11	523	36	12	14	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111434--111477	18	2.3	19	88	7	63	56	0	4	38	1.20
111439--111498	17	3.5	16	77	11	57	48	0	1	50	1.11

Tables:   1

The End!