genome.fa.s5695.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018402948.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_609.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19883

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639--1025	170	2.3	165	77	7	386	36	14	13	35	1.86
18--1618	171	9.4	170	75	5	1012	38	12	13	32	1.83
1323--1884	293	1.9	295	83	2	729	39	11	12	36	1.79
1195--2075	464	1.9	466	81	5	1068	39	12	13	35	1.81
1057--2210	635	1.8	633	81	4	1455	38	12	13	35	1.82
1618--2339	171	4.2	171	82	5	804	37	13	12	36	1.82
2610--3254	170	3.8	171	81	5	680	37	14	13	34	1.86
2610--3254	340	1.9	342	81	5	797	37	14	13	34	1.86
4055--11237	171	41.7	169	74	6	4320	37	13	13	34	1.84
5689--5720	16	2.0	16	93	0	55	12	21	12	53	1.71
8906--11050	341	6.3	343	78	3	1948	37	14	13	34	1.85
10868--11206	186	1.8	187	83	3	459	35	14	15	34	1.87
13467--13954	171	2.9	171	79	6	465	39	14	11	35	1.81
14385--14773	171	2.3	170	76	4	415	40	11	10	34	1.76
14963--17256	171	13.4	169	78	5	1839	39	13	12	34	1.83
14963--19883	342	14.3	339	70	9	2188	37	13	12	33	1.83
14904--19879	513	9.6	511	71	9	2720	37	13	12	33	1.83
17487--19883	171	14.1	171	76	6	1241	38	13	13	34	1.84
14887--19879	685	7.2	674	71	9	2602	37	13	12	33	1.83

Tables:   1

The End!