genome.fa.s57.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397310.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_409.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87413

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959--3641	171	15.7	169	77	7	2354	37	12	15	34	1.85
3981--7095	172	18.2	170	74	6	2117	36	12	14	33	1.85
4088--7095	343	8.8	340	75	6	1921	36	12	15	33	1.85
4229--6016	515	3.5	514	78	6	1238	37	12	14	33	1.85
6851--6892	22	2.0	21	85	4	57	52	7	11	28	1.64
7928--14524	171	38.5	169	77	6	5145	37	12	14	34	1.84
7928--27653	343	57.3	338	69	8	6725	36	12	14	33	1.83
15655--18482	171	16.5	171	75	5	2030	37	12	15	34	1.85
15721--18155	687	3.6	682	80	4	2413	37	13	15	34	1.86
19728--27653	171	46.2	170	76	6	5850	37	12	15	34	1.85
19728--27653	514	15.4	508	76	7	5813	37	12	15	34	1.85
27784--28368	171	3.4	167	78	10	560	35	13	15	35	1.87
32318--37006	171	27.4	168	74	8	3141	37	12	14	34	1.84
32416--33963	861	1.8	854	81	6	1962	38	12	14	34	1.84
32869--33862	346	2.9	342	76	7	796	38	13	14	33	1.85
32426--37006	343	13.4	336	74	8	2749	37	12	14	34	1.84
32746--36961	861	4.9	841	76	8	2666	38	12	15	34	1.84
37216--37658	171	2.6	168	77	8	437	40	11	14	33	1.81
37219--37896	346	2.0	343	79	6	744	38	12	14	34	1.83
38468--42622	171	24.3	171	70	9	1982	36	12	14	33	1.85
38468--40882	856	2.8	856	76	10	1883	37	13	15	34	1.86
45104--45972	343	2.5	340	82	3	985	36	12	15	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45072--45972	171	5.3	171	71	6	597	36	12	15	32	1.85
46079--46126	19	2.6	19	86	3	62	56	0	4	39	1.19
48230--52878	171	27.1	170	77	4	3717	37	13	14	34	1.85
48237--52882	857	5.4	852	77	5	2956	37	13	14	34	1.85
53686--56020	682	3.4	682	79	5	2029	38	12	14	34	1.84
53162--56141	171	17.4	171	76	5	2253	37	12	14	34	1.84
55441--55481	21	2.0	21	85	0	55	46	17	12	24	1.82
59572--59619	21	2.3	20	83	13	62	54	8	14	22	1.67
61482--61520	20	1.9	20	84	5	51	46	7	20	25	1.77
70521--70610	35	2.6	35	85	7	137	30	26	13	30	1.94
73901--74228	170	2.0	162	82	4	324	36	13	13	33	1.84
73777--74319	171	3.2	169	77	4	554	35	14	13	34	1.85
84890--86190	171	7.6	171	78	4	1269	38	12	13	35	1.83
84890--86190	345	3.8	337	80	6	1283	38	12	13	35	1.83

Tables:   1

The End!