genome.fa.s572.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397825.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1127.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23367

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--4339	171	25.3	169	72	6	1726	33	12	11	37	1.80
251--883	340	1.9	331	81	7	767	34	14	12	37	1.84
1522--1558	19	1.9	19	94	0	65	35	8	2	54	1.44
1357--1721	188	1.9	190	84	3	495	37	13	9	39	1.77
3580--3922	187	1.8	190	82	4	453	36	13	10	38	1.80
3060--4338	698	1.8	692	80	5	1523	34	12	11	38	1.79
4681--5248	170	3.3	170	79	5	608	34	14	11	35	1.82
5501--6061	171	3.3	169	77	7	508	34	13	13	36	1.84
5411--6061	342	1.9	340	82	3	808	35	12	13	36	1.83
7392--7883	170	3.0	160	84	3	391	32	13	11	38	1.81
6507--8399	171	11.0	170	75	7	1197	34	13	11	37	1.81
8049--8399	188	1.9	189	81	4	431	37	13	9	39	1.77
9118--9847	171	4.3	170	76	2	681	33	13	12	38	1.81
10519--11167	171	3.8	170	77	6	542	34	14	10	38	1.81
10519--11167	345	1.9	342	80	5	772	34	14	10	38	1.81
11665--11975	171	1.8	171	81	7	389	41	11	10	36	1.76
12511--13681	171	6.9	170	73	4	617	36	12	12	32	1.81
13810--14855	171	6.1	170	79	4	1077	38	11	13	34	1.82
13810--14855	514	2.0	512	82	4	1270	38	11	13	34	1.82
13810--14855	341	3.1	339	80	6	1141	38	11	13	34	1.82
15012--15364	169	2.1	169	83	5	428	42	11	11	35	1.76
15714--15750	19	1.9	19	94	0	65	51	2	10	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15546--15886	187	1.8	186	81	8	431	41	10	12	35	1.78
16057--16466	171	2.4	169	81	3	464	36	12	10	39	1.79
16757--17486	170	4.3	168	75	8	639	39	10	12	34	1.78
16755--17486	171	4.3	170	76	6	690	39	10	12	34	1.78
18951--19700	171	4.4	170	81	3	848	39	12	13	33	1.82
20350--20665	170	1.9	171	83	3	413	37	11	13	38	1.81
21451--23367	171	11.2	170	75	4	1374	34	12	12	36	1.81
21793--23367	341	4.6	342	76	3	1372	34	12	12	36	1.82

Tables:   1

The End!