genome.fa.s5721.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018402974.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_636.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57371

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383--428	21	2.2	20	82	14	58	0	26	4	69	1.07
1382--1461	34	2.3	35	87	6	110	27	27	16	28	1.97
2363--3462	170	6.4	168	74	4	729	38	11	11	34	1.78
5284--5633	171	2.0	171	80	3	391	38	12	13	36	1.82
5839--7185	170	7.9	171	75	7	1019	37	11	13	36	1.81
5839--7215	341	4.0	337	75	8	1085	37	11	13	36	1.81
6735--7074	169	2.1	160	73	14	323	37	11	13	33	1.81
7693--8027	171	2.0	160	74	12	348	34	12	11	37	1.80
8991--9308	169	1.9	161	85	2	354	35	11	12	37	1.80
10699--11129	171	2.5	171	83	3	494	41	12	11	35	1.78
12303--13414	170	6.6	169	73	11	705	34	13	12	39	1.82
12451--13407	329	2.9	331	77	9	924	34	12	12	39	1.82
13859--14240	170	2.2	171	82	3	457	34	16	11	37	1.84
15633--16946	341	3.9	337	77	7	1089	35	12	13	38	1.82
15490--16975	171	8.7	169	76	6	1095	35	12	12	38	1.82
17911--17960	24	2.1	23	81	3	55	26	22	16	36	1.94
20173--20934	171	4.5	169	76	9	615	39	12	12	36	1.80
20243--20934	170	4.1	170	78	7	631	39	11	12	35	1.80
21166--21695	171	3.1	171	81	2	634	37	13	13	35	1.85
22036--23002	171	5.7	169	74	5	602	37	12	13	35	1.82
24735--25456	171	4.3	170	72	7	482	38	12	11	34	1.80
25541--26386	171	5.0	167	76	8	602	39	13	12	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25605--26398	170	4.7	171	77	5	682	39	13	12	35	1.81
24713--27339	941	2.8	938	88	2	3646	39	12	12	34	1.81
26466--27359	171	5.3	167	75	7	587	38	12	13	34	1.83
31289--33092	171	10.6	170	78	4	1546	38	13	13	34	1.84
31289--33092	341	5.3	341	78	6	1559	38	13	13	34	1.84
31334--33092	512	3.4	510	77	6	1423	38	12	13	34	1.83
35863--35919	27	2.1	27	100	0	114	31	10	5	52	1.58
35949--37027	171	6.4	169	77	8	914	35	13	12	37	1.84
36030--36646	343	1.8	341	83	4	821	35	13	12	38	1.83
36564--36866	154	2.0	154	82	3	369	35	11	13	38	1.82
37960--38327	171	2.2	171	76	3	366	36	14	12	36	1.84
38761--39808	171	6.1	170	77	5	959	35	13	12	39	1.81
38761--39808	343	3.1	336	78	5	1068	35	13	12	39	1.81
40889--41860	171	5.7	171	74	7	694	34	13	11	38	1.80
42483--43124	171	3.8	166	76	8	542	38	13	14	33	1.85
43460--44216	171	4.4	170	77	5	663	39	11	13	35	1.81
43625--44216	170	3.5	171	77	5	529	40	11	12	34	1.80
44281--44868	170	3.5	168	76	6	492	38	13	14	33	1.85
44449--45095	169	3.8	169	75	6	436	38	13	12	34	1.83
45211--45757	170	3.2	169	80	4	493	40	12	12	34	1.81
45822--47060	340	3.6	337	79	5	1113	38	12	13	34	1.82
45822--47083	170	7.4	171	77	5	993	38	12	13	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45960--47091	511	2.2	509	80	3	1247	39	12	13	34	1.82
47971--49392	171	8.3	171	78	5	1227	38	13	13	35	1.84
47971--49307	341	3.9	340	79	6	1170	39	13	12	35	1.82
49601--50039	171	2.6	171	82	4	528	39	10	13	35	1.80
50524--51772	170	7.3	171	76	6	1023	39	12	12	35	1.80
50524--51772	510	2.4	509	78	7	1176	39	12	12	35	1.80
51837--52788	170	5.6	168	76	8	786	38	12	13	35	1.83
52164--52775	339	1.8	339	85	4	867	39	13	14	33	1.84
53154--53696	170	3.2	170	81	4	603	38	11	14	35	1.82
54653--55973	170	7.8	171	78	4	1186	39	12	13	34	1.82
54663--55966	512	2.6	510	80	2	1447	39	12	13	34	1.82
54663--55966	341	3.8	338	77	3	1152	39	12	13	34	1.82

Tables:   1

The End!