Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397828.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_113.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31400

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1748--3672
171
11.3
170
78
7
1620
34
15
11
38
1.82
1748--3672
341
5.6
339
77
7
1672
34
15
11
38
1.82
4300--7769
171
20.3
170
77
6
2836
34
14
11
39
1.81
8959--9438
172
2.8
171
73
5
441
33
12
12
38
1.82
10169--11703
171
9.0
169
78
7
1411
35
14
11
38
1.83
12578--14167
171
9.3
170
79
6
1428
34
14
12
38
1.83
12587--14167
343
4.6
334
77
8
1319
34
14
12
38
1.83
14278--15245
170
5.7
169
74
11
585
33
14
10
38
1.82
14252--15245
343
3.0
339
76
7
895
34
14
10
38
1.81
14907--15216
158
2.0
157
81
4
365
34
15
10
39
1.81
15323--15958
172
3.7
171
77
6
585
33
13
11
39
1.81
16681--19587
171
17.0
170
75
5
1892
33
14
12
37
1.83
16679--19587
512
5.7
510
78
4
2412
33
14
12
37
1.83
20649--21472
171
4.8
172
75
8
670
34
14
11
39
1.82
20651--21474
343
2.4
341
79
5
842
34
14
11
39
1.82
21876--22877
171
5.9
170
78
6
970
35
15
10
38
1.82
21876--22876
343
2.9
338
81
6
1126
35
15
10
38
1.82
21876--22877
514
2.0
512
83
4
1266
35
15
10
38
1.82
27383--28023
171
3.7
171
74
7
394
38
11
14
34
1.81

Tables:   1

The End!