genome.fa.s5757.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403010.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_677.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30410

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69--363	149	2.0	149	86	0	419	36	14	11	37	1.83
2655--3975	170	7.7	169	77	7	1145	36	13	15	34	1.87
2655--3975	512	2.6	511	80	5	1298	36	13	15	34	1.87
4525--4887	172	2.1	170	79	3	379	36	14	13	35	1.85
6696--8197	172	8.8	170	77	6	1340	37	13	14	34	1.85
6696--8191	684	2.2	684	80	6	1584	37	13	14	34	1.85
6692--8193	512	2.9	505	78	7	1526	37	13	14	34	1.85
8487--10298	171	10.6	170	77	6	1520	37	13	14	34	1.85
8487--10298	513	3.5	506	79	7	1711	37	13	14	34	1.85
10545--11086	172	3.2	170	78	7	427	35	11	14	34	1.83
11997--12928	171	5.5	169	79	7	959	37	12	15	34	1.86
15044--15457	172	2.4	170	82	7	482	36	15	12	35	1.86
16238--16534	148	2.0	149	91	2	481	35	11	16	36	1.85
15913--16883	491	2.0	490	84	4	1278	36	12	15	35	1.85
16386--16990	171	3.5	171	81	6	681	35	13	15	35	1.86
16388--17585	644	1.9	643	84	3	1615	36	12	15	35	1.86
16980--20190	171	18.8	169	78	5	2870	36	13	15	34	1.87
20623--21274	172	3.8	170	76	4	486	36	11	13	34	1.82
20620--22456	171	10.8	171	70	5	694	35	11	13	32	1.81
20623--21422	170	4.7	171	76	4	556	36	12	14	35	1.83
23026--23358	171	2.0	170	80	3	382	37	12	15	34	1.84
23860--24694	171	4.9	170	81	8	888	36	13	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26243--26575	172	1.9	171	83	4	420	33	14	13	37	1.86
26701--26985	149	2.0	136	84	9	367	36	14	13	32	1.84
28357--29378	171	6.0	167	72	9	625	33	14	12	36	1.84
29937--30274	169	2.0	168	81	1	399	34	13	11	36	1.82
29587--30410	170	4.8	169	75	4	665	33	14	12	35	1.83

Tables:   1

The End!