genome.fa.s5785.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403038.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_705.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24854

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1755--2129	172	2.2	172	81	5	429	33	12	13	40	1.82
2758--3145	171	2.3	171	77	7	412	34	13	15	35	1.87
5008--6305	171	7.6	171	78	5	1121	38	15	13	32	1.86
5004--6305	513	2.5	506	80	5	1502	38	15	13	32	1.86
7224--7959	171	4.3	169	76	10	594	34	14	12	38	1.84
12743--13263	171	3.0	171	81	2	607	39	12	13	34	1.83
13906--24597	342	31.2	339	79	4	9580	38	14	13	32	1.85
14895--24597	341	28.4	342	81	4	9513	38	14	13	32	1.86
14895--24597	171	56.8	169	79	6	8665	38	14	13	32	1.86

Tables:   1

The End!