genome.fa.s5815.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403068.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_733.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59330

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--1893	171	11.0	171	79	4	1669	34	14	11	38	1.83
2357--3013	172	3.8	170	80	4	687	38	12	14	35	1.84
2856--3144	148	2.0	148	84	5	379	37	12	15	34	1.85
2688--3330	318	2.0	322	82	5	777	38	13	15	33	1.86
3001--3483	170	2.8	170	81	6	505	37	12	15	34	1.85
3594--5580	171	11.7	169	75	7	1397	34	14	12	38	1.84
3594--5545	513	3.8	513	79	5	1927	34	14	12	38	1.84
4000--5583	838	1.9	835	80	3	1871	35	14	12	38	1.84
6067--7933	171	10.9	170	77	6	1506	38	12	13	35	1.83
6072--7933	512	3.6	507	79	5	1788	38	12	13	35	1.83
8289--9205	171	5.4	171	78	6	827	34	14	12	38	1.84
9904--11855	171	11.5	172	76	9	1514	35	15	11	37	1.84
11203--11853	172	4.0	156	76	13	522	35	15	12	37	1.85
11956--14886	171	17.2	170	79	5	2482	35	13	12	38	1.83
11956--14886	513	5.7	507	79	5	2778	35	13	12	38	1.83
15882--20067	171	24.3	170	74	7	2490	37	12	13	33	1.83
15882--18718	171	16.6	170	80	4	2553	38	12	14	34	1.83
15882--18718	342	8.3	340	80	4	2822	38	12	14	34	1.83
15878--20203	683	6.3	680	74	7	2188	37	12	13	33	1.83
21424--21896	171	2.8	170	79	4	418	40	11	13	32	1.80
27016--27379	171	2.1	170	82	5	446	34	11	13	41	1.80
28246--28272	10	2.7	10	100	0	54	18	7	0	74	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30038--30606	171	3.3	170	81	6	528	33	12	12	40	1.81
31229--31775	171	3.2	169	72	3	443	36	12	13	33	1.83
36753--37246	169	2.9	169	83	7	603	41	11	12	34	1.79
37401--38013	340	1.8	338	82	6	792	41	13	12	33	1.81
37272--38173	171	5.3	171	77	7	786	40	13	12	33	1.82
39351--39766	171	2.4	170	81	4	442	32	12	12	42	1.80
39858--42279	171	14.2	168	76	8	1670	34	13	12	39	1.83
39875--42279	341	7.0	338	76	8	1819	34	13	12	39	1.83
42560--45280	171	15.9	168	75	7	1913	38	13	13	33	1.84
42615--45298	513	5.2	511	77	6	2113	39	13	13	33	1.84
45934--47439	171	8.8	171	75	6	1092	39	14	12	33	1.83
46477--47439	511	1.9	513	81	4	1192	40	14	11	34	1.82
49420--51174	170	10.3	168	75	8	1020	36	11	11	39	1.79
49439--51174	511	3.4	501	76	7	1449	36	11	11	39	1.79
49630--51174	341	4.5	342	76	6	1163	36	11	11	39	1.78
52583--54507	171	11.3	170	79	6	1467	39	12	12	35	1.81
52588--54538	342	5.7	338	77	8	1686	39	12	12	35	1.81
56684--59325	171	15.5	169	74	9	1396	39	11	13	35	1.81
56940--59206	512	4.5	508	76	8	1464	39	11	13	35	1.81
56687--59324	341	7.7	340	75	7	1721	39	11	13	35	1.81

Tables:   1

The End!