genome.fa.s5829.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403082.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_748.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40274

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10772--11081	171	1.9	160	79	6	277	35	9	14	37	1.79
21520--22032	170	3.0	170	78	6	563	35	14	10	37	1.81
22265--22956	171	4.1	171	77	9	606	35	14	10	39	1.81
22892--23017	61	2.0	61	83	3	153	35	8	9	46	1.68
22954--23827	171	5.1	170	76	7	700	34	14	10	39	1.82
23955--23996	21	2.1	21	86	8	61	42	9	14	33	1.78
23644--24077	237	1.8	235	83	5	581	35	12	11	40	1.79
23877--25468	171	9.4	169	78	8	1364	35	14	10	39	1.81
25361--25583	115	1.9	114	82	3	277	32	13	9	44	1.76
25186--25755	288	2.0	285	80	4	646	34	13	11	41	1.80
25471--26417	171	5.5	170	80	6	887	34	14	12	39	1.83
26561--27021	172	2.7	169	81	5	487	35	15	9	39	1.80
27924--28640	173	4.2	171	75	6	440	35	14	11	37	1.83
29834--30911	170	6.3	170	76	11	753	34	13	11	40	1.81
29931--30908	169	5.7	169	77	9	688	34	14	11	40	1.81
30791--31086	151	2.0	152	82	3	373	34	15	10	39	1.81
31221--31586	170	2.2	168	83	2	464	39	10	14	34	1.81
31221--31775	169	3.3	170	79	8	492	38	10	14	35	1.82
31834--32590	170	4.4	171	78	7	688	38	10	15	34	1.82
31955--32677	170	4.3	163	76	10	510	40	10	14	33	1.82
31834--32668	339	2.4	336	74	9	733	38	11	15	34	1.83
33291--35511	170	13.0	170	78	6	1786	35	13	11	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36959--37287	170	1.9	170	80	4	387	34	14	9	40	1.79

Tables:   1

The End!