genome.fa.s5837.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403090.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_756.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16881

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--4359	171	25.5	169	77	5	3522	34	13	12	39	1.82
2--4334	682	6.4	677	78	5	3774	34	13	12	39	1.82
19--4359	853	5.1	847	78	5	4078	34	13	12	39	1.82
4366--4907	171	3.2	173	79	3	522	36	12	10	40	1.78
3937--4843	474	1.9	472	78	6	992	36	12	13	38	1.82
5191--5522	171	1.9	171	80	8	390	35	14	12	37	1.85
5788--6219	170	2.5	168	82	4	485	34	12	10	41	1.78
6320--7772	171	8.5	171	77	4	1209	38	12	13	35	1.83
6359--7775	341	4.1	337	78	8	1253	38	12	13	35	1.83
6359--7609	512	2.4	511	79	3	1325	38	12	13	35	1.83
7849--8336	171	2.9	170	82	5	520	38	12	13	35	1.83
8776--9818	172	6.1	170	77	6	995	38	12	13	34	1.83
8776--9818	341	3.1	338	77	5	1060	38	12	13	34	1.83
11354--11776	172	2.5	171	81	5	487	34	14	13	36	1.86
11944--12564	171	3.6	171	74	3	468	34	13	13	37	1.84
13239--15022	171	10.5	168	76	7	1468	35	13	12	38	1.83

Tables:   1

The End!