genome.fa.s5839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403092.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_758.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20607

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--1217	171	7.2	169	78	8	1117	35	13	13	38	1.83
1216--2461	171	7.3	171	80	3	1256	39	12	12	35	1.81
1216--2464	511	2.4	508	84	3	1538	39	12	12	35	1.81
2655--3373	171	4.2	172	83	5	846	39	11	12	36	1.79
3093--4030	342	2.9	314	78	9	807	39	12	11	36	1.80
3442--7604	171	24.3	171	76	6	3173	39	12	12	35	1.81
6277--6332	28	2.0	28	89	6	87	28	16	23	32	1.96
6565--6991	168	2.6	160	82	8	447	40	12	13	33	1.82
7741--8470	170	4.3	167	76	9	546	37	13	13	34	1.84
8865--9779	171	5.4	170	80	4	896	36	10	14	36	1.82
10828--11309	171	2.8	168	76	2	442	35	12	12	37	1.81
12147--13025	171	5.1	171	79	2	812	37	12	13	34	1.83
13308--13809	170	2.9	167	78	9	503	35	12	13	38	1.83
13977--14330	171	2.1	169	83	8	434	34	12	13	40	1.81
14483--15089	171	3.6	170	80	8	593	35	11	12	39	1.80
15431--15921	171	2.9	168	79	5	538	35	12	12	38	1.81
15770--16069	149	2.0	148	81	4	345	37	13	12	36	1.82
18316--18689	171	2.2	171	80	5	414	35	12	12	39	1.81

Tables:   1

The End!