genome.fa.s5877.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403130.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_798.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27991

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410--794	169	2.3	169	75	3	398	35	13	10	38	1.79
1334--1650	171	1.9	160	82	4	316	35	14	14	32	1.86
2150--5202	171	17.9	170	74	6	1719	35	12	11	38	1.79
5465--5957	170	2.9	171	79	4	539	34	10	12	41	1.79
5401--5982	171	3.4	171	79	4	636	35	12	13	38	1.83
7883--9030	170	6.7	170	80	4	1199	35	13	12	38	1.82
9662--11451	171	10.5	171	79	4	1741	36	13	12	37	1.82
9662--11437	514	3.5	509	83	4	2002	36	13	12	37	1.82
11557--12981	171	8.3	169	78	5	1195	37	12	13	36	1.83
11557--12981	342	4.2	341	78	5	1329	37	12	13	36	1.83
11622--12979	513	2.7	506	79	6	1364	38	12	12	36	1.82
13393--14204	171	4.8	168	77	7	762	38	11	13	35	1.82
14110--14303	98	2.0	98	85	0	262	43	9	15	31	1.79
14368--14394	9	3.0	9	100	0	54	77	0	0	22	0.76
14205--14646	178	2.5	180	83	5	548	40	10	14	34	1.81
13798--14644	447	1.9	441	83	5	1098	39	10	14	35	1.81
16886--20630	171	22.0	171	78	4	3335	35	12	12	37	1.82
21270--23922	171	15.6	171	78	4	2367	36	13	12	37	1.83
21270--23922	509	5.2	506	78	6	2386	36	13	12	37	1.83
25021--25348	171	2.0	157	85	3	329	35	12	10	37	1.79
26406--27886	171	8.7	169	79	4	1437	36	13	12	38	1.82
26461--27886	510	2.8	508	80	5	1496	36	13	12	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26406--27886	341	4.3	338	80	4	1600	36	13	12	38	1.82
26406--27886	681	2.2	682	81	4	1781	36	13	12	38	1.82
27849--27919	33	2.2	33	94	0	124	33	5	5	54	1.47

Tables:   1

The End!