genome.fa.s5878.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403131.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_799.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17766

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
903--934	7	4.9	7	85	14	50	62	12	15	9	1.54
1166--1868	171	4.1	170	75	5	571	34	13	11	39	1.81
1190--1841	342	1.9	341	81	3	794	34	12	11	40	1.81
2103--3171	170	6.3	170	79	4	1035	35	12	12	38	1.82
2103--3171	342	3.1	337	81	6	1122	35	12	12	38	1.82
3463--3773	172	1.8	172	85	4	439	37	15	11	35	1.83
4014--4385	169	2.2	171	81	1	426	33	15	11	36	1.84
5283--5654	169	2.2	171	82	4	450	34	15	11	38	1.83
5763--7096	171	7.8	170	78	7	1240	35	13	12	37	1.83
5763--7096	342	3.9	341	80	5	1390	35	13	12	37	1.83
6117--7991	973	1.9	973	80	5	2148	35	13	12	38	1.83
7091--9687	342	7.6	337	75	7	1638	35	13	12	38	1.83
7091--9530	513	4.8	510	77	6	1938	35	13	12	38	1.82
7091--9552	171	14.4	171	76	7	1291	35	13	12	38	1.82
8764--9432	174	3.9	174	76	9	456	36	13	12	37	1.82
9636--9746	53	2.1	53	84	0	141	32	11	10	45	1.75
9121--10248	565	2.0	567	85	2	1511	35	13	13	37	1.84
9689--10418	170	4.3	169	78	4	752	35	13	13	37	1.83
10580--10906	171	2.0	163	76	9	311	36	11	11	37	1.78
11381--12163	171	4.6	171	73	6	570	37	12	13	33	1.82
12831--14105	171	7.5	169	74	8	779	35	13	12	38	1.83
12835--14105	512	2.5	507	81	4	1322	35	13	12	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12832--14138	341	3.8	337	76	7	915	35	13	12	37	1.84
14437--15724	171	7.5	168	77	6	974	36	13	12	38	1.82
14437--15577	171	6.7	170	78	5	987	36	12	12	37	1.82
14437--15575	343	3.3	339	80	5	1177	36	12	12	37	1.82
16126--17232	171	6.5	171	78	4	968	34	11	13	39	1.82

Tables:   1

The End!