genome.fa.s59.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397312.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_266.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78654

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--311	171	1.8	171	84	4	428	33	13	11	41	1.80
485--1416	171	5.4	171	83	3	1065	35	14	12	37	1.84
920--962	21	2.0	21	81	0	50	44	16	13	25	1.85
1966--3794	171	10.7	171	76	3	1334	34	13	12	37	1.83
4227--4569	172	2.1	162	72	15	302	37	11	13	34	1.82
4192--4939	171	4.4	168	75	5	497	37	12	12	33	1.82
6669--6944	152	1.8	151	85	3	385	39	13	14	32	1.84
8289--8331	21	2.0	21	82	8	52	46	13	11	27	1.78
11967--12636	171	3.9	171	77	4	670	39	10	12	35	1.79
13696--15229	171	9.0	170	76	5	1177	37	12	14	34	1.84
16199--17458	171	7.4	170	75	6	957	37	12	13	36	1.82
16199--17457	512	2.5	508	83	3	1578	37	12	13	36	1.82
20020--24529	171	26.4	170	77	6	3529	35	13	13	38	1.83
20020--24529	512	8.8	505	75	8	3392	35	13	13	38	1.83
20020--24529	341	13.2	341	76	7	3439	35	13	13	38	1.83
21695--21737	21	2.0	21	86	0	59	46	13	9	30	1.75
24985--25732	171	4.4	170	79	6	631	34	12	12	39	1.81
24985--25732	342	2.2	341	80	5	778	34	12	12	39	1.81
25894--27867	171	11.5	168	76	8	1436	36	13	12	37	1.83
25894--27867	856	2.3	851	84	2	2605	36	13	12	37	1.83
25894--27835	513	3.8	510	77	5	1706	35	13	12	38	1.83
28631--29522	171	5.2	169	73	10	571	35	13	13	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30524--33441	171	17.1	168	75	6	1800	38	12	14	35	1.83
30524--33441	341	8.5	337	75	7	2010	38	12	14	35	1.83
33554--34699	171	6.7	171	77	7	987	39	13	12	34	1.82
33554--35470	341	5.7	335	73	10	1348	39	13	12	35	1.82
35088--35118	16	1.9	16	93	0	53	67	3	0	29	1.06
34820--35473	170	3.8	171	80	2	686	37	12	12	36	1.82
34883--36103	635	1.9	635	84	4	1611	38	12	13	36	1.81
35513--36281	171	4.5	172	86	2	987	38	12	14	34	1.84
37572--38135	170	3.3	170	79	8	558	39	13	13	34	1.84
38645--39604	169	5.7	167	77	7	552	35	13	11	39	1.81
38645--39604	170	5.7	166	77	7	575	35	13	11	39	1.81
38682--39638	510	1.9	509	81	5	1153	35	12	12	39	1.81
41468--41630	76	2.1	76	89	2	247	39	7	14	38	1.73
47711--48284	170	3.4	170	80	3	618	35	13	12	38	1.83
48531--50229	171	9.9	169	72	8	874	33	13	11	38	1.80
50737--51042	166	1.8	169	82	7	399	33	12	13	41	1.81
50917--51180	139	1.9	138	85	3	370	33	12	9	43	1.75
50746--51352	310	2.0	305	82	4	727	33	12	12	41	1.81
51052--54412	171	19.6	170	78	6	2795	34	13	12	39	1.83
53219--53251	13	2.5	13	100	0	66	48	0	6	45	1.27
54408--54785	170	2.2	171	79	3	449	37	12	14	35	1.84
57266--57602	170	2.0	170	83	1	424	38	11	11	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57864--59140	171	7.5	170	72	6	704	37	12	13	33	1.82
58655--59648	514	2.0	484	79	5	849	36	12	12	33	1.81
61178--62975	171	10.5	171	80	4	1720	38	11	13	36	1.81
61223--62975	514	3.4	508	81	4	1922	38	11	13	36	1.81
61177--62974	343	5.3	340	80	6	1738	38	11	13	36	1.81
65006--65363	170	2.1	170	83	2	459	38	11	13	36	1.82
65619--67187	171	9.2	168	76	6	1216	37	14	13	34	1.84
65619--67187	341	4.6	338	76	7	1318	37	14	13	34	1.84
68362--68922	170	3.3	168	75	4	495	38	12	13	34	1.82
69577--70528	513	1.9	507	80	3	1142	39	12	13	34	1.82
69456--70538	342	3.2	333	75	8	918	38	12	13	34	1.84
69456--70538	171	6.4	169	74	8	804	38	12	13	34	1.84
71601--73684	171	12.3	170	77	7	1772	39	12	13	34	1.82
71601--73684	849	2.5	850	85	4	2736	39	12	13	34	1.82
73208--73247	21	1.9	21	84	0	53	27	10	17	45	1.80
77886--78360	171	2.8	170	81	3	535	38	13	13	34	1.84

Tables:   1

The End!