genome.fa.s5958.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403211.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_88.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26929

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1374--2435	171	6.2	170	82	3	1165	35	14	13	36	1.86
4024--4495	171	2.8	170	77	1	482	34	13	14	34	1.86
5224--7209	511	3.9	510	82	3	2204	34	15	12	35	1.86
5224--7260	171	11.9	169	77	6	1746	34	15	12	36	1.86
7800--8122	169	2.0	161	82	5	323	33	15	13	34	1.85
10391--10720	172	2.0	160	85	3	358	35	11	14	35	1.83
11409--11860	171	2.6	170	75	3	442	34	12	14	36	1.83
12477--14344	171	11.0	171	82	2	2042	37	12	14	35	1.84
12479--14344	511	3.7	507	83	2	2010	37	12	14	35	1.84
12479--14344	340	5.5	339	81	3	2012	37	12	14	35	1.84
15859--17177	171	7.7	170	81	3	1405	35	13	14	36	1.86
21008--23154	171	12.6	170	80	3	2156	36	13	13	35	1.85
21010--23154	340	6.3	338	78	6	1998	36	13	13	35	1.85
21016--23154	511	4.2	508	80	5	2246	36	13	13	35	1.85
23915--24240	171	1.9	171	85	1	447	34	14	13	35	1.84
24456--26929	171	14.6	169	76	7	1970	36	13	14	34	1.84

Tables:   1

The End!