genome.fa.s5971.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403224.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_895.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34592

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223--1622	171	2.3	171	87	2	563	37	15	13	34	1.86
1724--2100	171	2.2	170	79	3	389	33	13	12	36	1.83
2565--2607	21	2.0	21	86	0	59	44	20	11	23	1.84
2328--2722	171	2.3	170	82	6	476	34	14	12	35	1.84
3929--4700	171	4.5	170	79	4	714	35	13	11	34	1.82
7185--7800	171	3.6	172	77	2	508	36	12	13	34	1.83
9016--9303	155	1.9	155	80	7	343	32	13	13	39	1.84
9171--10471	171	7.6	170	82	5	1270	34	14	13	37	1.85
8874--10471	342	4.7	340	79	5	1462	34	14	13	38	1.85
8874--10383	513	3.0	506	80	6	1596	34	14	13	37	1.85
10919--11441	171	3.1	169	79	4	514	33	14	12	37	1.84
10919--11439	170	3.1	170	79	3	424	33	14	12	37	1.84
11972--13078	342	3.2	337	79	7	1124	34	13	14	37	1.84
11972--13078	171	6.5	168	78	6	1021	34	13	14	37	1.84
11979--13078	513	2.1	514	79	5	1168	35	13	13	37	1.84
13180--13615	171	2.5	171	74	3	376	33	16	12	33	1.86
13775--16312	171	14.9	171	82	4	2755	34	14	13	37	1.86
13775--16312	343	7.4	342	82	3	2755	34	14	13	37	1.86
17653--17962	171	1.9	161	80	6	359	32	15	13	35	1.86
22407--23200	171	4.6	173	75	6	674	35	13	13	31	1.84
24782--26078	170	7.6	171	80	4	1287	36	13	14	34	1.86
26585--26923	173	2.0	160	80	10	360	35	13	11	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27769--28214	170	2.6	171	78	2	466	33	16	11	33	1.85
31025--31857	346	2.4	341	78	3	749	33	12	15	35	1.84
30884--31857	171	5.7	170	72	5	643	33	11	15	35	1.84
33724--34592	171	5.1	170	84	3	989	36	12	15	35	1.85
33727--34591	340	2.5	340	83	2	1027	36	12	15	35	1.85

Tables:   1

The End!