genome.fa.s60.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397313.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1198.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77416

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--1188	171	6.9	171	76	4	990	38	14	13	34	1.84
1--2077	341	6.2	339	76	9	1695	37	13	13	35	1.85
1192--2070	171	5.2	170	76	8	839	35	12	14	36	1.85
1454--2080	170	3.8	159	72	13	365	36	12	14	36	1.85
1607--2073	170	2.7	171	79	7	439	36	13	13	36	1.83
2174--2592	171	2.5	171	79	4	443	41	11	12	34	1.79
3459--4752	171	7.6	169	78	5	1104	37	12	15	34	1.85
3459--4752	341	3.8	339	79	5	1259	37	12	15	34	1.85
3462--4746	512	2.5	510	78	5	1218	37	12	15	34	1.85
5033--6725	171	9.9	170	77	5	1379	37	13	14	34	1.85
5033--6725	510	3.3	506	79	6	1640	37	13	14	34	1.85
7301--9123	171	10.7	169	78	7	1625	36	12	14	36	1.84
7303--9123	681	2.7	677	78	4	1966	36	12	14	36	1.84
9970--10145	65	2.7	65	90	0	289	28	17	13	40	1.86
10100--10732	170	3.7	168	79	6	501	37	12	12	35	1.81
10251--10732	168	2.8	167	81	5	547	38	12	13	35	1.82
11319--16728	171	31.7	170	77	5	4140	38	12	13	35	1.83
11582--15147	341	10.4	340	77	8	846	38	12	13	35	1.83
11328--16728	854	6.3	844	78	6	4426	38	12	13	35	1.83
16994--18770	171	10.4	169	77	8	1374	38	12	13	35	1.83
16996--18732	515	3.4	498	78	8	1463	38	12	13	35	1.83
19021--19335	171	1.8	171	79	6	370	36	11	16	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21805--21831	10	2.7	10	100	0	54	81	0	0	18	0.69
22051--23852	171	10.6	169	75	8	1343	37	11	14	35	1.83
22051--23852	342	5.3	334	77	8	1569	37	11	14	35	1.83
23485--23852	170	2.2	172	81	7	448	38	11	13	36	1.81
23953--25955	171	11.7	170	78	4	1685	36	13	11	37	1.82
23953--25955	341	5.9	341	78	4	1734	36	13	11	37	1.82
23953--25955	512	3.9	510	79	5	1959	36	13	11	37	1.82
26064--27137	171	6.3	169	75	7	809	35	13	12	38	1.83
26198--26955	341	2.2	340	79	4	801	35	13	12	38	1.83
26941--26965	9	2.8	9	100	0	50	12	0	0	88	0.53
28402--28435	10	3.4	10	84	15	52	73	0	8	17	1.08
27762--28559	172	4.7	168	73	7	618	37	11	14	35	1.81
27762--28999	338	3.7	337	81	4	1219	38	11	13	34	1.81
31758--34639	171	16.9	170	76	8	2303	34	14	13	37	1.85
31758--34639	512	5.6	509	76	10	2519	34	14	13	37	1.85
34808--41242	341	18.8	336	72	11	2580	35	13	12	38	1.82
34808--36760	170	11.5	170	77	8	1534	35	13	12	38	1.82
34950--41243	511	12.2	503	71	12	1805	35	13	12	38	1.82
36782--41230	171	26.3	171	74	10	2511	35	13	12	38	1.82
36041--37480	746	1.9	740	80	7	1626	35	13	12	38	1.83
41404--42765	171	8.0	169	74	5	958	34	14	11	37	1.82
44310--45138	171	4.8	170	76	4	515	34	14	10	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53314--53384	21	3.4	21	98	0	133	33	14	15	36	1.87
58938--59515	171	3.4	169	80	1	652	35	12	12	38	1.80
60126--60458	168	2.0	161	77	12	320	33	13	11	38	1.81
59748--61174	171	8.4	171	70	8	555	34	13	11	37	1.80
60840--61176	172	2.0	172	80	9	384	35	15	11	37	1.84
62343--62440	49	2.0	51	82	8	121	26	8	6	59	1.50
62392--62971	160	3.5	166	78	8	457	33	11	11	42	1.77
62908--63112	106	1.9	106	87	5	299	39	10	12	37	1.78
63014--66312	171	19.3	170	77	4	2631	34	13	12	37	1.82
66464--67788	171	7.8	170	78	6	1106	38	12	13	34	1.83
66464--67788	341	3.9	341	77	7	1110	38	12	13	34	1.83
66464--67556	512	2.1	511	81	4	1263	39	13	12	34	1.82
68023--69116	171	6.5	171	77	7	846	38	13	13	35	1.83
68735--69042	156	2.0	156	84	3	406	35	14	14	35	1.87
69940--70004	29	2.1	31	80	8	71	18	27	18	35	1.94
71051--73351	171	13.5	171	80	3	2172	37	13	14	34	1.85
71057--73351	514	4.5	514	81	3	2470	37	13	14	34	1.85
72987--73291	161	1.9	161	88	1	459	40	11	15	32	1.83

Tables:   1

The End!