Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403266.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_94.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18266

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
198--1601
172
8.3
169
74
9
676
36
12
15
34
1.86
153--1597
341
4.3
336
77
8
1169
37
12
15
34
1.85
198--1601
498
2.8
496
78
6
1162
36
12
15
34
1.86
3022--3276
129
2.0
129
82
4
309
41
10
13
34
1.79
3151--6378
171
18.9
169
76
7
1994
38
11
13
35
1.82
3151--8752
342
16.4
342
71
7
2238
37
11
13
34
1.80
3151--10728
513
14.8
509
73
7
3153
38
11
13
34
1.81
6586--8766
171
12.8
170
77
6
1535
38
11
13
35
1.81
8623--8898
147
1.9
146
87
1
401
43
10
13
32
1.78
8769--10728
171
11.5
171
78
5
1513
39
11
13
35
1.81
12028--14827
342
8.2
340
76
7
1997
38
11
13
35
1.82
12028--14751
171
16.0
169
74
8
1557
38
11
13
35
1.81
14928--16101
171
6.9
170
78
5
955
36
13
12
37
1.82
16104--18200
342
6.1
337
80
5
1975
35
14
11
38
1.82
16104--18207
171
12.3
169
78
6
1765
35
14
11
38
1.82

Tables:   1

The End!