Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397856.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1160.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33242

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1137--2936
171
10.5
169
80
6
1799
36
14
11
38
1.82
1137--5046
513
7.7
510
74
8
2579
35
13
11
37
1.81
3272--5050
171
10.4
170
80
5
1530
36
14
10
38
1.81
3272--5050
343
5.2
341
78
6
1710
36
14
10
38
1.81
5560--7146
170
9.3
168
78
7
1315
35
14
10
39
1.81
5560--7146
342
4.7
338
79
5
1519
35
14
10
39
1.81
7148--10094
171
17.3
171
80
5
2784
35
14
12
38
1.83
6378--7916
769
2.0
771
82
2
1860
36
13
10
39
1.80
7148--10094
341
8.7
340
80
6
2811
35
14
12
38
1.83
12352--13028
171
3.9
169
79
3
694
38
12
13
35
1.81
12356--13028
343
2.0
342
83
2
850
38
12
12
35
1.81
13655--14285
171
3.7
170
77
4
629
38
12
12
36
1.81
15591--15957
169
2.1
171
80
5
404
39
11
11
36
1.78
20034--20339
170
1.9
160
82
5
314
42
10
12
31
1.77
19922--20812
171
5.2
170
73
6
440
38
11
13
33
1.81
22459--23540
343
3.2
336
79
6
1086
38
10
15
35
1.82
22455--23544
170
6.3
170
78
7
968
38
10
15
35
1.82
24192--25063
172
5.1
172
82
5
876
39
10
15
34
1.82
25075--26307
172
7.2
172
77
6
1072
39
10
14
34
1.81
25085--26312
513
2.4
515
77
8
1169
38
10
14
35
1.81
28111--28906
171
4.7
171
78
8
673
35
14
11
38
1.82
28193--28914
344
2.1
341
80
7
802
37
14
10
36
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29192--31810
171
15.3
171
78
6
2317
36
14
11
38
1.81
29192--31807
341
7.6
341
78
6
2325
36
14
11
38
1.81

Tables:   1

The End!