genome.fa.s6041.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403294.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_968.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10658

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--877	171	5.1	170	80	5	894	39	13	13	33	1.83
1--877	170	5.1	169	80	4	904	39	13	13	33	1.83
1--877	341	2.6	338	81	3	1015	39	13	13	33	1.83
1194--1815	341	1.8	342	84	3	867	39	11	14	34	1.82
929--1815	171	5.2	168	78	6	802	38	12	14	34	1.84
2007--4654	171	15.6	169	77	6	2251	37	13	14	35	1.85
2007--4654	341	7.8	341	78	5	2226	37	13	14	35	1.85
2015--4654	683	3.9	681	80	5	2674	37	13	14	35	1.85
3932--4241	152	2.1	150	88	2	451	40	11	13	34	1.82
4932--10658	171	33.7	169	77	7	4508	38	12	14	35	1.83
4929--10656	681	8.4	679	79	6	5046	38	12	13	35	1.83
4932--10647	512	11.2	510	77	7	4763	38	12	13	35	1.83

Tables:   1

The End!