genome.fa.s6042.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403295.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_968.2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34319

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--2158	171	12.6	170	77	7	1674	38	12	12	36	1.81
3--2158	341	6.3	339	78	5	1863	38	12	13	36	1.81
3--2158	512	4.2	503	77	7	1750	38	12	13	36	1.81
31--2158	683	3.1	678	79	6	1655	38	12	12	36	1.81
2779--3538	172	4.4	169	78	7	640	39	11	13	35	1.81
2732--3621	171	5.2	170	76	5	792	37	11	14	36	1.82
4254--4624	170	2.2	170	81	0	454	38	10	12	35	1.78
4878--4917	21	1.9	21	85	10	55	25	17	15	42	1.88
5178--6763	171	9.3	171	78	6	1384	38	12	13	34	1.83
5178--6763	343	4.6	339	78	6	1299	38	12	13	34	1.83
14043--16075	171	11.9	171	78	4	1814	34	15	12	37	1.85
14051--16075	341	5.9	338	78	5	1868	34	15	12	37	1.85
17265--17310	20	2.3	20	100	0	92	28	10	8	52	1.66
18699--19014	170	1.9	159	83	0	310	36	12	12	34	1.82
18265--21459	341	9.3	340	75	5	2252	37	12	13	34	1.83
18265--21448	171	18.6	171	74	5	2041	37	12	13	34	1.83
23245--23284	21	1.9	21	85	10	55	27	17	12	42	1.85
22937--23413	170	2.8	171	79	4	464	38	13	14	33	1.86
24399--28653	171	25.0	169	74	8	2417	37	12	14	34	1.84
24420--28662	341	12.4	340	74	6	2927	37	12	14	34	1.84
29078--29550	171	2.8	171	79	3	461	37	11	15	33	1.83
29962--30235	137	2.0	136	82	3	336	37	11	15	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30099--31236	171	6.7	168	77	6	966	37	13	15	34	1.85
30099--31241	341	3.3	338	78	6	1042	37	13	15	34	1.85

Tables:   1

The End!