genome.fa.s6070.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018403323.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_995.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19007

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4239--5723	171	8.7	169	78	6	1345	38	12	13	34	1.83
4219--5706	512	2.9	509	82	5	1815	38	12	13	34	1.84
7256--8145	171	5.2	171	76	6	567	37	14	13	34	1.85
7258--8145	342	2.6	343	81	5	883	37	13	13	34	1.85
8548--8881	170	2.0	161	78	9	334	36	13	12	33	1.83
8424--10137	171	10.0	172	70	5	833	36	12	13	33	1.83
8424--10137	342	5.0	340	72	4	956	36	12	13	33	1.83
8424--10137	513	3.3	511	75	4	1175	36	12	13	33	1.83
11415--13019	171	9.4	170	78	7	1357	34	13	12	39	1.83
11415--13019	342	4.7	340	79	6	1583	34	13	12	39	1.83
14550--16787	343	6.6	341	78	5	1970	38	11	14	34	1.81
14550--16787	171	13.1	171	78	4	1927	38	11	14	34	1.81
17327--19007	171	10.0	170	77	7	1488	38	12	13	34	1.83
17492--17791	157	1.9	156	84	0	402	37	11	14	36	1.82
17654--19007	336	4.0	344	78	7	1028	38	13	13	34	1.84

Tables:   1

The End!