genome.fa.s61.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397314.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_855.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76141

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9718--10162	171	2.6	168	80	7	445	40	13	12	33	1.81
10218--12165	170	11.4	171	72	9	567	40	11	12	35	1.80
10218--12166	340	5.7	338	73	8	1299	40	11	12	35	1.80
13458--29800	171	95.7	170	74	7	9298	38	12	13	35	1.81
29517--30087	302	1.9	300	80	7	674	40	11	10	37	1.76
29387--30277	473	1.9	470	81	4	1089	41	11	10	35	1.77
29856--30862	171	5.9	170	77	6	788	40	11	12	35	1.79
29814--30894	342	3.2	338	76	6	1007	39	11	12	35	1.80
30893--31840	171	5.6	171	79	4	887	38	12	14	34	1.85
30893--34765	342	11.2	343	77	6	2929	38	12	13	34	1.83
31837--34731	171	16.9	170	78	4	2285	39	12	13	34	1.82
30893--36060	684	7.6	672	76	8	3619	39	12	13	34	1.83
32089--35929	171	22.6	169	73	10	835	39	12	13	34	1.82
34645--34910	145	1.8	144	85	5	376	45	8	10	34	1.69
34779--36099	171	7.7	168	77	6	1032	39	12	13	34	1.81
34779--36141	342	4.0	342	76	6	1186	39	12	13	35	1.82
30898--36896	513	11.8	511	73	11	2421	38	12	13	34	1.83
36263--37164	171	5.3	169	77	6	673	37	13	13	34	1.84
35683--36638	480	2.0	480	80	6	1064	37	13	13	35	1.84
36252--37004	335	2.2	339	79	6	814	38	13	13	34	1.84
36846--37164	170	1.9	161	86	4	367	35	11	15	34	1.83
43538--43585	21	2.2	21	88	3	69	77	6	14	2	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46082--46269	72	2.6	72	83	3	227	37	17	20	24	1.94
47819--47977	73	2.2	73	86	0	219	39	13	16	30	1.87
47819--48002	73	2.5	73	81	0	179	39	13	17	29	1.88
48971--49000	15	1.9	16	93	6	53	26	6	13	53	1.64
49307--49953	321	2.0	322	81	6	758	35	13	11	39	1.81
48734--50452	170	10.2	169	75	9	1202	34	13	12	39	1.82
49630--50452	341	2.4	335	81	7	897	34	13	12	39	1.81
52562--52591	2	15.0	2	100	0	60	50	0	0	50	1.00
54784--64909	171	59.1	171	75	7	6743	35	13	12	39	1.82
54784--76141	342	62.6	340	70	11	7626	34	13	12	38	1.82
62693--62743	21	2.4	21	77	6	50	39	1	5	52	1.37
65019--65538	169	3.0	169	80	4	569	33	14	11	39	1.83
64332--66193	648	2.9	640	82	4	2083	33	14	12	38	1.85
65563--76141	171	61.9	171	71	9	3670	34	13	12	38	1.83
66808--66846	21	1.9	20	84	5	51	41	17	17	23	1.91
65856--70878	336	14.8	330	72	10	1728	34	12	12	39	1.82
65854--71747	679	8.7	674	73	9	2936	34	12	12	39	1.82
69659--70875	508	2.4	502	79	5	1214	35	13	12	38	1.83
70874--71620	170	4.4	168	81	5	741	33	14	11	40	1.82
70246--71518	643	2.0	637	80	5	1440	34	12	12	40	1.81
70874--74593	341	10.7	342	71	12	1044	34	14	12	38	1.84
71533--72000	253	1.8	253	82	3	593	33	15	14	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71774--76141	341	12.8	337	74	7	2931	34	13	12	38	1.83

Tables:   1

The End!