genome.fa.s62.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397315.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_515.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75742

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5628--5667	15	2.7	15	100	0	80	57	7	0	35	1.27
12369--12814	170	2.6	170	78	5	418	39	11	14	32	1.81
18712--19131	171	2.5	170	81	5	492	34	15	10	40	1.82
19342--19676	172	2.0	169	83	2	420	37	12	14	35	1.83
19695--20379	170	4.0	171	80	5	751	41	11	13	33	1.80
19695--20379	343	2.0	341	82	4	826	41	11	13	33	1.80
21459--22008	171	3.2	170	77	5	540	37	11	13	35	1.81
29697--29728	16	2.0	16	93	0	55	71	6	0	21	1.07
34566--34607	22	1.9	22	85	9	59	50	0	14	35	1.43
38095--38891	172	4.7	172	82	5	865	38	10	14	36	1.81
41912--42106	106	1.8	104	82	5	248	38	10	13	36	1.80
43588--44055	171	2.8	161	77	10	406	36	11	12	35	1.79
44790--45108	171	1.9	171	80	3	374	39	10	13	33	1.79
46193--46231	21	1.9	20	89	5	60	35	5	7	51	1.53
45963--46721	170	4.5	168	73	7	509	39	10	13	33	1.79
47350--47785	171	2.5	171	79	4	473	35	12	16	34	1.86
48453--49539	340	3.2	336	76	5	882	39	11	13	33	1.81
48507--49539	170	6.1	170	75	5	537	38	11	13	34	1.81
49217--49539	172	1.9	161	84	5	348	37	13	13	33	1.82
50044--50568	172	3.1	169	75	4	462	37	10	13	33	1.80
51539--51932	172	2.3	171	77	6	424	33	12	10	40	1.78
53783--54623	172	4.9	172	76	4	743	34	14	11	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53779--54619	343	2.5	342	80	4	933	34	14	11	39	1.82
55062--55723	341	2.0	332	83	2	749	37	9	13	35	1.78
54914--55929	171	5.9	170	75	4	614	36	10	14	35	1.80
62731--63054	170	2.0	159	79	8	271	35	11	12	36	1.80
63253--64081	171	4.9	171	72	6	513	36	12	11	35	1.79
64096--64201	49	2.2	49	87	3	151	34	6	10	48	1.64
65268--65301	14	2.4	14	100	0	68	8	5	14	70	1.31
66659--69028	171	13.9	171	76	5	1838	38	11	14	35	1.82
66737--72067	513	10.3	509	71	9	1964	37	11	13	34	1.81
69124--72063	172	17.1	172	76	4	2320	37	11	13	34	1.81
69124--72063	345	8.6	342	77	5	2363	37	11	13	34	1.81
69125--72063	517	5.7	512	77	5	2382	37	11	13	34	1.81

Tables:   1

The End!