genome.fa.s63.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397316.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_465.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75555

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--11784	171	68.9	171	74	4	7053	34	12	12	37	1.82
325--718	169	2.3	169	79	3	407	35	13	11	39	1.82
1--16770	341	49.1	337	71	8	2840	34	13	12	37	1.82
2747--3744	512	2.0	502	79	5	1021	34	13	13	37	1.84
11897--16813	170	28.8	169	72	6	2801	34	13	12	37	1.83
11937--18574	171	39.0	169	71	7	2886	34	13	12	37	1.82
12879--13189	172	1.8	173	83	3	421	32	12	13	41	1.82
14008--14344	173	2.0	162	72	14	311	32	10	13	40	1.80
18578--22360	171	22.2	171	73	6	2059	34	13	12	36	1.83
18574--28647	513	19.8	507	70	8	2755	34	12	12	36	1.81
21719--22045	170	2.0	160	77	9	309	37	11	12	35	1.80
19468--22140	845	3.2	835	77	6	2662	35	13	12	38	1.82
22726--23051	171	2.0	161	77	9	318	34	10	12	38	1.79
22390--23405	169	6.0	170	76	3	851	34	12	12	37	1.83
23571--28418	171	28.4	170	75	6	3141	34	12	12	38	1.82
23571--62452	342	113.5	339	68	9	9870	34	13	11	36	1.81
27423--28212	170	4.7	158	75	11	485	35	13	11	38	1.82
28947--33385	171	26.0	171	74	4	2738	34	13	12	36	1.83
31241--31578	170	2.0	161	73	13	313	34	12	11	38	1.79
29289--33278	512	7.8	512	74	5	1816	34	14	12	36	1.83
32308--33385	508	2.1	499	84	2	1223	34	14	12	35	1.85
33648--35579	171	11.3	169	75	6	1341	35	12	11	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35701--36219	171	3.0	172	80	5	502	36	13	12	37	1.82
36386--36752	171	2.1	172	83	2	452	36	13	10	37	1.79
37055--37522	170	2.8	161	75	10	322	33	12	12	38	1.81
36913--38483	171	9.2	171	74	7	1008	35	13	11	38	1.81
37368--38457	513	2.1	508	79	5	1155	35	13	12	38	1.82
38525--41617	171	18.1	170	75	5	1955	35	12	11	38	1.80
38525--40789	511	4.4	508	77	4	1771	35	12	11	37	1.80
38665--41538	341	8.4	339	73	7	1012	35	12	11	38	1.80
41871--43532	170	9.7	169	74	8	957	34	13	11	37	1.82
43101--43136	17	2.1	17	89	0	54	8	2	8	80	0.99
42951--43282	179	1.9	179	84	5	456	34	13	12	38	1.83
43649--43949	165	1.8	165	83	1	397	34	13	15	36	1.86
43982--45067	171	6.3	170	75	5	794	34	13	11	37	1.81
45109--50451	171	31.3	171	72	6	3020	34	13	12	37	1.82
45534--47390	512	3.6	501	74	8	1040	34	13	12	37	1.83
47372--47411	20	2.0	20	100	0	80	30	5	10	55	1.54
47818--47858	21	1.9	22	90	5	66	43	14	17	24	1.86
45107--50158	683	7.4	681	74	6	2308	34	13	12	37	1.82
51103--62451	171	66.4	169	70	7	3019	34	13	12	37	1.82
56262--62452	171	36.2	170	73	7	3463	34	13	12	37	1.83
45077--62452	513	33.9	507	70	9	5768	34	13	12	37	1.82
62995--63270	151	1.8	151	86	1	401	34	13	11	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63132--64436	171	7.6	171	77	9	671	33	14	13	38	1.85
63136--64485	342	3.9	341	78	6	1336	34	14	13	38	1.85
63136--64485	513	2.6	509	77	8	1417	34	14	13	38	1.85
64745--65084	170	2.0	171	80	8	390	32	12	12	42	1.81
65462--66046	172	3.4	168	78	6	530	34	12	13	40	1.82
66202--67584	171	8.1	171	74	4	798	34	12	11	38	1.80
66202--75555	342	27.4	341	71	8	3100	34	13	12	37	1.82
67615--75555	171	46.5	171	73	5	4644	34	13	12	37	1.82

Tables:   1

The End!