genome.fa.s631.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397884.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1189.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20599

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1668--3031	171	8.0	171	82	4	1518	38	12	13	35	1.83
1668--3031	514	2.7	509	84	3	1786	38	12	13	35	1.83
4763--5349	171	3.4	168	74	7	501	35	10	15	36	1.82
6919--7839	171	5.4	171	73	5	660	37	11	12	34	1.80
8058--9376	171	7.7	171	80	3	1447	37	12	14	35	1.84
8058--9388	513	2.6	509	82	3	1596	37	12	14	35	1.85
11473--11800	171	2.0	161	82	5	324	36	10	14	35	1.80
12767--13881	171	6.5	170	79	3	1148	38	11	13	35	1.82
12783--13881	342	3.2	339	82	2	1310	38	11	13	35	1.82
16386--18136	171	10.2	171	82	4	1911	38	12	14	34	1.83
16386--18136	344	5.1	343	81	5	1889	38	12	14	34	1.83
16386--18136	515	3.4	508	82	4	1921	38	12	14	34	1.83
18844--20021	172	6.9	169	78	5	1102	38	12	13	35	1.82
18851--20021	342	3.4	339	80	6	1290	38	12	13	35	1.82
18851--19995	514	2.2	512	85	2	1521	38	12	13	35	1.82

Tables:   1

The End!