genome.fa.s64.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397317.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_46.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74951

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7055--9434	170	14.0	170	77	6	1861	38	12	13	34	1.83
7053--9441	341	7.0	334	76	9	1400	38	12	13	34	1.83
13551--13666	26	4.3	25	67	18	72	27	15	17	39	1.90
13581--13639	32	1.9	31	82	6	75	30	13	15	40	1.86
13551--13767	82	2.7	79	80	6	235	28	17	17	36	1.93
13716--13877	45	3.6	45	82	0	198	32	20	15	32	1.94
13700--13889	90	2.1	90	83	0	229	31	20	15	33	1.93
13716--13900	45	4.1	45	83	0	190	31	19	15	32	1.93
16169--16688	170	3.0	167	74	12	466	36	14	12	36	1.84
17534--17933	172	2.3	171	79	5	416	37	12	11	38	1.80
19322--19363	22	1.9	21	85	9	57	30	7	9	52	1.61
20126--20783	171	3.8	172	70	9	421	36	13	13	32	1.85
21405--21724	171	1.9	171	84	0	433	34	14	14	37	1.86
22110--22304	45	4.3	45	86	0	246	32	19	18	29	1.96
25143--25632	171	2.9	170	80	3	518	39	11	14	35	1.82
32587--33204	340	1.8	331	80	5	720	34	13	12	36	1.83
33628--37753	171	24.2	170	74	6	2743	34	13	12	38	1.83
35816--36127	156	2.0	155	79	7	337	33	12	13	39	1.83
40051--40502	170	2.6	169	81	4	530	33	15	12	38	1.84
41705--42179	171	2.8	170	82	3	515	35	14	11	38	1.83
41705--42236	171	3.1	171	81	3	491	35	13	12	37	1.83
42272--42976	171	4.1	167	77	5	563	34	13	12	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43108--43897	171	4.6	169	77	5	662	34	14	12	38	1.83
46185--46907	171	4.2	169	73	8	500	36	12	14	35	1.83
47463--47822	170	2.1	171	83	4	451	37	11	13	36	1.81
50875--51268	171	2.3	172	82	5	485	34	15	10	38	1.83
52218--52258	21	1.9	21	85	5	55	46	9	19	24	1.80
53087--53673	171	3.4	166	75	9	479	34	12	12	39	1.81
55924--56256	171	2.0	161	81	5	314	35	13	11	36	1.81
60243--61759	171	8.9	171	75	5	892	38	11	13	35	1.82
60243--61759	342	4.4	336	74	7	1092	38	11	13	35	1.82
61861--63386	171	8.9	170	77	5	1196	35	13	12	38	1.82
61861--63386	342	4.5	340	78	4	1370	35	13	12	38	1.82
63526--65705	171	12.7	171	75	4	1380	33	13	12	37	1.84
63527--65714	344	6.4	339	74	7	1144	33	13	12	37	1.83
65087--65129	21	2.0	21	86	0	59	41	16	18	23	1.89
65036--65667	341	1.9	332	79	5	632	33	15	12	35	1.85
66442--67460	171	6.0	170	79	6	889	39	12	13	34	1.83
67029--67071	21	2.0	21	86	0	59	25	20	13	39	1.90
66442--67409	341	2.8	341	81	4	1031	39	12	14	34	1.83
66463--67460	512	1.9	512	80	6	1137	38	12	14	34	1.83
68301--69507	171	7.1	168	73	8	624	34	13	11	38	1.81
68300--69507	342	3.5	337	77	8	1011	34	13	11	38	1.81
69211--69599	171	2.3	171	82	5	464	34	12	13	39	1.82

Tables:   1

The End!