genome.fa.s65.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397318.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_387.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70638

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--1112	171	6.5	169	75	7	891	34	12	12	39	1.81
3029--7900	171	28.4	171	71	9	2008	37	12	13	33	1.83
5265--7900	171	15.5	171	77	6	2129	37	12	13	35	1.84
5877--6171	162	1.8	160	83	7	391	35	14	15	34	1.88
5265--7900	343	7.7	342	76	6	2249	37	12	13	35	1.84
5265--7892	515	5.1	508	77	7	1922	37	12	13	35	1.83
13024--16604	171	21.0	169	77	6	2638	34	14	13	37	1.85
13056--16601	683	5.2	673	78	5	2710	34	14	13	37	1.85
13024--16604	854	4.2	853	80	4	3370	34	14	13	37	1.85
16409--16447	20	1.9	20	84	5	51	41	12	20	25	1.88
16780--22235	171	32.1	168	75	9	2481	38	13	13	34	1.84
16755--22241	342	16.1	339	77	7	4234	38	13	13	34	1.84
16780--22241	513	10.7	509	77	8	4144	38	13	13	34	1.84
24679--26097	171	8.3	169	78	5	1254	39	12	13	34	1.83
24771--26146	342	4.0	341	79	4	1421	39	12	13	34	1.83
26450--30227	171	22.1	170	78	5	3085	38	12	13	34	1.83
26450--31411	855	5.9	849	78	6	4282	38	12	13	34	1.83
30253--31411	170	6.9	169	78	7	1020	38	13	13	34	1.84
30253--31411	339	3.4	336	77	8	1072	38	13	13	34	1.84
37486--37844	170	2.1	171	83	3	454	40	13	12	33	1.83
43077--43630	171	3.2	169	79	3	504	34	13	13	38	1.84
43505--43774	144	1.9	144	83	6	350	35	14	16	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43660--45692	682	3.0	674	80	5	2076	35	14	12	38	1.83
43640--45692	171	12.0	169	77	7	1626	35	13	12	38	1.83
45587--45627	21	2.0	21	90	9	66	41	9	17	31	1.82
47586--48986	171	8.2	170	79	5	1302	38	13	14	34	1.85
47587--48986	515	2.7	511	80	4	1489	38	13	14	34	1.85
47586--48999	685	2.1	685	82	4	1678	38	13	14	34	1.85
49728--51278	171	9.1	170	77	4	1136	35	14	12	37	1.85
49728--51279	514	3.0	510	77	5	1483	35	14	12	37	1.85
55676--57159	171	8.7	170	76	5	1205	35	14	12	37	1.83
57794--60044	171	13.3	169	76	8	1683	34	13	13	38	1.84
60082--60909	172	4.9	168	76	9	700	35	15	11	36	1.85
59328--60866	822	1.9	821	80	7	1801	35	14	13	37	1.85
61570--63781	170	13.0	170	79	6	2055	34	13	12	38	1.83
61570--63764	341	6.4	340	78	7	1972	35	13	12	38	1.83
64498--64974	170	2.8	169	79	6	464	39	13	13	34	1.83
65120--65446	170	1.9	170	79	7	369	38	13	14	33	1.85
67830--68710	170	5.2	170	77	8	712	39	11	13	35	1.81
68041--68334	160	1.8	160	84	2	403	38	11	16	34	1.84
68818--70638	171	10.7	168	77	7	1379	35	13	12	38	1.83

Tables:   1

The End!