genome.fa.s66.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397319.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_26.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70238

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--629	171	3.7	171	82	3	753	36	13	13	34	1.84
1--629	343	1.8	343	83	2	841	36	13	13	34	1.84
892--1564	172	4.0	161	73	11	373	37	13	13	33	1.84
844--1653	338	2.4	343	79	4	854	38	13	13	33	1.84
1734--6730	171	29.2	171	71	4	2454	35	12	10	35	1.79
1744--6730	341	14.6	340	70	6	2187	35	12	10	35	1.79
4198--6730	341	7.4	339	81	4	2469	37	13	11	37	1.81
15126--16364	171	7.2	171	76	5	889	35	11	14	35	1.82
15126--16364	342	3.6	339	75	5	1082	35	11	14	35	1.82
16986--17304	174	1.8	171	85	4	444	36	12	11	38	1.80
16892--17855	340	2.8	335	73	7	834	36	11	14	34	1.82
19263--19607	171	2.0	171	84	2	442	35	10	13	37	1.79
20436--21533	170	6.4	169	79	8	1039	35	14	12	37	1.83
22053--22546	171	2.9	171	81	2	510	35	13	13	35	1.84
23741--24066	171	1.9	172	81	0	402	35	14	12	34	1.84
27486--27873	171	2.3	171	82	3	451	36	13	11	38	1.80
28047--28415	170	2.2	162	78	11	357	36	10	12	34	1.78
28158--28488	170	2.0	161	76	9	301	35	12	13	35	1.83
28366--28676	171	1.9	161	80	6	290	33	14	12	36	1.83
37112--37521	171	2.4	170	84	4	493	37	15	9	35	1.80
41003--41462	170	2.7	162	77	10	429	33	15	13	33	1.86
41703--42723	171	6.0	170	72	5	752	36	13	11	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50894--51712	171	4.8	170	80	5	857	37	12	14	35	1.84
52110--53901	171	10.5	172	82	3	1811	37	11	13	36	1.82
52131--53901	684	2.6	681	82	3	2128	38	11	13	36	1.82
54191--55657	171	8.6	169	81	5	1415	36	11	13	37	1.82
55756--56399	342	1.9	341	81	3	774	37	13	12	36	1.83
55752--56399	171	3.8	169	78	5	631	37	13	12	35	1.83
56460--56989	171	3.1	170	79	4	480	37	12	12	34	1.82
58619--58649	16	1.9	16	100	0	62	64	3	0	32	1.09
59434--59749	171	1.8	171	83	2	420	39	11	12	36	1.80
60406--60816	172	2.4	170	87	3	583	34	13	14	37	1.85
60979--62521	170	9.1	169	75	5	1094	36	12	12	35	1.82
61680--61723	16	2.7	16	75	3	52	63	6	2	27	1.31
63886--64201	172	1.9	161	76	11	307	36	11	11	37	1.76
64341--64739	171	2.3	171	80	1	469	35	12	13	36	1.82
65228--66066	171	4.9	171	77	4	587	36	11	13	35	1.81
66402--66709	170	1.8	171	80	3	379	34	12	15	37	1.86

Tables:   1

The End!