Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397915.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1220.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22449

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1990--2321
171
2.0
161
84
3
355
37
10
14
35
1.80
2981--4505
171
8.9
167
78
8
1358
39
11
13
35
1.82
3071--4513
342
4.2
342
80
6
1563
39
11
14
34
1.82
2981--4505
513
3.0
506
81
6
1620
39
11
13
35
1.82
5120--5479
172
2.1
171
80
6
390
33
14
11
37
1.83
5651--6055
214
1.9
204
83
6
446
33
17
11
36
1.85
5865--9042
171
18.6
171
75
7
2369
34
14
10
37
1.82
8785--9334
293
1.9
292
82
2
692
35
12
11
40
1.80
9086--9633
171
3.2
171
82
3
638
36
14
9
38
1.80
8614--9534
464
2.0
464
85
1
1256
35
14
11
38
1.82
9961--11323
171
8.0
170
77
9
1021
35
14
10
39
1.81
9961--11323
342
4.0
336
77
8
1177
35
14
10
39
1.81
13267--13756
171
2.9
169
81
6
515
34
14
11
38
1.81
15492--15910
171
2.5
170
80
4
459
37
15
10
36
1.81
17323--17590
144
1.9
144
82
7
337
37
17
10
35
1.84
17446--18489
170
6.1
172
79
5
980
35
14
11
39
1.82
20296--21399
171
6.5
169
74
4
760
32
13
13
36
1.83

Tables:   1

The End!