genome.fa.s67.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397320.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_985.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69038

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587--2985	172	14.0	169	77	5	1913	38	12	13	35	1.82
3251--3940	171	4.0	169	80	4	733	37	12	14	35	1.84
3251--3947	341	2.0	343	82	4	827	37	12	15	35	1.84
3946--7521	171	20.9	171	79	4	3280	38	12	13	35	1.82
3458--4430	489	2.0	488	81	6	1157	38	13	12	35	1.82
3946--7521	685	5.2	676	81	4	3359	38	12	13	35	1.82
7509--8699	171	7.0	170	82	4	1265	34	14	14	36	1.87
7540--8701	513	2.3	510	82	6	1436	34	14	14	37	1.87
9888--10457	171	3.3	170	78	4	588	35	12	13	38	1.83
11177--11540	171	2.1	171	82	3	428	34	14	12	39	1.83
11177--12191	172	5.9	172	77	4	750	34	12	12	38	1.81
11312--12191	344	2.6	343	78	4	887	34	12	11	38	1.80
12375--12778	171	2.4	171	75	7	401	35	14	13	34	1.84
12797--13131	171	2.0	159	75	16	345	36	12	10	37	1.77
13778--14961	171	6.9	171	79	6	1080	36	13	11	38	1.82
13782--14866	341	3.2	339	84	4	1288	36	13	11	38	1.82
15673--16217	171	3.2	169	72	5	506	33	12	12	36	1.81
16387--17341	170	5.6	170	74	6	543	34	12	11	38	1.80
18787--19613	171	4.8	170	75	4	709	37	11	13	35	1.80
18787--19613	342	2.4	340	81	3	955	37	11	13	35	1.80
19729--21834	172	12.3	169	78	6	1762	38	11	13	35	1.81
19729--21690	342	5.7	341	78	7	1627	38	11	13	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19729--21837	514	4.1	512	79	5	1954	38	11	13	35	1.81
19735--21690	684	2.9	680	79	7	1921	38	11	13	35	1.81
21967--22534	171	3.3	171	80	4	486	39	13	12	33	1.81
23482--26066	171	15.1	171	79	5	2329	38	12	13	35	1.83
23482--26070	511	5.0	509	78	5	2452	38	12	13	35	1.83
23490--25878	682	3.5	678	79	5	2044	38	12	13	35	1.83
26261--26847	171	3.5	167	76	6	554	39	13	13	32	1.83
26949--27990	172	6.1	171	76	7	855	36	12	13	34	1.83
27593--27903	170	1.9	158	86	4	340	35	13	14	33	1.84
28148--29557	171	8.3	170	77	5	1116	37	13	13	34	1.83
28414--29557	511	2.2	509	81	4	1234	37	12	13	35	1.83
29650--32263	343	7.5	340	72	9	1561	37	13	11	33	1.81
29655--30493	171	4.9	170	81	6	894	38	13	12	34	1.83
30580--32263	172	9.7	170	74	10	723	39	13	12	34	1.82
31111--31163	26	2.0	26	92	0	88	28	16	16	37	1.91
31137--32263	172	6.6	171	79	5	1148	40	13	12	34	1.81
32272--32309	17	2.3	16	95	4	67	57	5	13	23	1.56
31881--32667	415	1.9	415	82	5	984	40	12	13	33	1.82
32296--34051	171	10.2	170	77	6	1396	38	12	13	35	1.83
32296--34051	343	5.1	343	78	4	1590	38	12	13	35	1.83
34062--37486	172	20.1	170	77	6	2792	37	12	13	36	1.82
34177--37573	343	10.0	339	76	6	2512	38	12	13	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35007--36616	171	9.4	166	76	10	538	38	12	12	36	1.81
36769--36820	20	2.5	20	96	3	95	25	9	15	50	1.74
36843--37461	171	3.6	171	80	3	609	39	11	12	35	1.80
37677--40621	171	17.2	171	77	4	2161	38	11	13	35	1.81
37677--40324	854	3.1	850	83	3	3117	38	11	13	35	1.81
40935--42637	171	10.0	170	77	4	1359	34	13	13	37	1.84
43738--43812	35	2.1	35	87	4	107	30	10	28	30	1.90
43746--43820	35	2.1	35	90	4	116	24	12	29	34	1.91
46134--46651	172	3.0	172	73	8	478	37	10	13	34	1.80
51237--51279	19	2.2	20	91	4	70	53	4	9	32	1.53
51275--51312	17	2.3	16	90	4	58	60	5	10	23	1.50
52675--56005	171	19.4	172	76	9	2313	38	12	13	35	1.83
52833--56005	344	9.2	340	75	9	2314	38	12	13	35	1.82
54497--54535	20	2.0	20	100	0	78	23	25	15	35	1.94
58366--59126	172	4.4	170	78	4	747	35	13	10	39	1.80
63516--63844	171	2.0	161	81	2	311	36	13	13	33	1.84
65364--66026	171	3.9	172	77	3	557	34	12	11	37	1.80
65334--66001	343	2.0	333	81	4	693	34	12	11	37	1.80

Tables:   1

The End!