genome.fa.s68.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397321.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1934.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66653

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102--1477	171	8.1	168	75	5	848	35	12	11	38	1.80
2037--2313	152	1.8	152	85	1	394	35	11	10	42	1.76
2189--7748	171	32.8	170	75	7	3522	35	13	12	38	1.82
2189--7749	341	16.4	338	75	8	3639	35	13	12	38	1.82
12721--15750	171	17.8	171	78	6	2388	35	12	12	39	1.81
12732--15776	341	8.9	339	77	7	2359	35	12	12	39	1.81
12714--15764	512	6.0	507	78	6	2370	35	12	12	39	1.81
16989--19238	171	13.3	170	77	7	1588	35	11	12	40	1.80
17563--17851	154	1.9	154	82	2	366	38	9	12	40	1.75
17711--19238	341	4.5	339	77	7	1222	35	11	12	40	1.79
16991--18999	512	4.0	510	80	8	1989	35	11	12	40	1.79
19339--19685	167	2.1	169	81	3	396	41	10	12	35	1.78
19823--21121	342	3.8	339	78	8	1228	38	12	14	35	1.83
19859--21149	171	7.6	169	78	6	1054	37	12	14	35	1.84
24090--24133	18	2.3	19	88	7	63	38	2	2	56	1.24
24599--25918	171	7.7	170	76	6	980	38	12	12	35	1.82
26844--26900	25	2.3	24	85	5	78	29	12	31	26	1.92
27937--30393	171	14.4	171	75	5	1586	34	13	11	38	1.81
27937--30393	341	7.2	341	75	7	1602	34	13	11	38	1.81
30535--31492	172	5.6	170	75	3	692	35	14	10	37	1.81
32149--32966	172	4.8	169	79	5	627	36	11	11	38	1.79
44846--54918	171	59.0	169	70	8	3931	33	12	12	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44843--58893	342	41.2	339	70	9	4586	34	12	12	37	1.81
47607--58893	512	22.1	503	70	9	2786	34	12	12	37	1.81
55623--56227	169	3.6	168	75	9	449	33	12	13	40	1.82
56267--58194	510	3.8	509	75	6	1228	35	13	12	37	1.82
55103--58893	340	11.1	336	74	7	2053	35	12	12	37	1.81
54998--58893	171	22.9	169	73	6	2227	35	12	11	38	1.81
59580--59946	171	2.1	170	77	3	423	34	13	12	37	1.82
61419--66653	171	30.9	169	74	8	2821	39	12	12	34	1.80
61419--65825	171	25.9	170	76	7	2898	39	11	12	35	1.80
61419--66653	341	15.5	342	75	8	3260	39	12	12	34	1.80
61419--66653	678	7.7	671	75	10	3461	39	12	12	34	1.80

Tables:   1

The End!