genome.fa.s69.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397322.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_455.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65988

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
892--3971	171	18.1	170	76	5	2221	38	12	12	35	1.82
892--3971	513	6.0	512	78	4	2517	38	12	12	35	1.82
4083--4465	170	2.3	170	80	3	439	38	12	12	36	1.80
4655--5537	171	5.2	168	73	8	559	39	11	12	35	1.79
6057--6531	171	2.8	169	77	5	429	37	13	14	35	1.85
7953--8310	171	2.1	169	81	9	406	36	12	11	40	1.78
8654--8973	171	1.9	161	82	1	309	34	13	13	35	1.84
9311--9898	169	3.4	169	77	5	504	33	12	12	39	1.81
10675--11084	171	2.4	169	80	6	443	33	13	14	38	1.85
15092--18675	171	21.1	167	71	7	869	37	11	13	34	1.80
15088--15963	341	2.6	327	78	8	828	36	10	13	35	1.80
15325--18674	513	6.6	504	76	5	2071	37	11	13	34	1.80
17705--18675	342	2.8	342	81	5	1091	39	10	12	35	1.79
19227--24135	171	28.8	171	78	5	4170	35	12	12	38	1.82
19231--24132	512	9.6	510	81	4	4498	35	12	12	39	1.82
23932--24451	284	1.8	284	82	2	659	35	9	12	40	1.76
24218--24914	171	4.1	171	79	2	695	35	13	12	37	1.84
23770--24648	455	1.9	455	80	4	1022	36	11	12	38	1.80
25027--26138	171	6.6	169	75	7	906	34	11	13	38	1.80
26280--30196	171	22.7	171	73	8	2249	35	13	13	38	1.83
30813--33902	171	18.1	170	71	7	1437	37	12	12	34	1.81
32961--33900	512	1.9	503	79	7	996	39	11	12	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34566--35153	170	3.5	169	80	3	642	40	13	12	34	1.81
35292--35712	174	2.4	170	80	3	416	40	13	12	31	1.82
36005--37668	171	9.7	170	75	5	1064	37	12	12	35	1.82
36009--37438	513	2.8	506	80	5	1433	37	13	12	35	1.83
36005--37668	516	3.2	512	79	5	1326	37	12	12	35	1.82
39115--39703	171	3.5	168	73	7	463	34	14	13	35	1.86
39151--39545	170	2.3	171	78	3	366	34	14	12	37	1.85
39727--39985	142	1.8	143	81	2	324	36	6	13	42	1.71
40524--41386	342	2.5	338	80	5	914	39	12	13	34	1.83
40524--41602	171	6.3	169	76	6	809	38	12	13	33	1.83
40524--41571	512	2.0	511	78	4	1076	39	12	13	33	1.83
41814--43236	170	8.3	170	76	7	1062	38	12	13	36	1.82
41954--43221	341	3.7	334	78	6	1140	38	12	13	35	1.82
43104--43377	150	1.8	150	82	6	358	43	9	11	35	1.74
43836--44193	170	2.1	171	82	3	436	37	12	13	36	1.83
44759--46158	171	8.2	168	74	3	698	36	12	13	34	1.83
44752--46158	341	4.1	340	75	4	1157	36	12	13	34	1.82
46314--47255	172	5.5	171	76	4	711	38	12	13	35	1.82
46615--47244	343	1.8	343	81	2	771	39	12	13	35	1.81
47263--59008	341	34.5	340	77	6	8645	39	12	12	35	1.81
47250--50584	171	19.5	171	79	5	2866	40	12	11	35	1.80
50576--50614	21	1.9	21	85	15	55	25	15	12	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50437--50727	143	2.0	143	84	1	377	42	12	8	35	1.74
50832--50861	15	1.9	16	93	6	53	60	6	0	33	1.23
50580--59007	171	49.4	168	78	5	6744	38	12	12	35	1.82
58924--58963	21	2.0	21	85	5	55	25	10	17	47	1.78
59750--60384	172	3.7	172	75	6	572	35	11	13	37	1.80
61688--62359	170	3.9	170	77	4	638	36	13	12	38	1.82
64543--64979	169	2.6	169	85	1	559	40	13	12	33	1.82
64550--65102	171	3.2	169	83	3	592	38	13	13	34	1.84

Tables:   1

The End!