genome.fa.s698.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397951.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1255.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31337

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1356--2999	171	9.6	171	80	4	1550	38	12	13	33	1.84
1356--2999	342	4.8	343	81	3	1760	38	12	13	33	1.84
1323--2998	513	3.3	506	80	6	1819	38	12	14	34	1.84
3115--4337	171	7.2	169	78	7	985	38	12	14	34	1.84
6936--7336	172	2.3	172	87	1	561	33	10	14	41	1.80
7489--7534	24	2.0	23	82	4	56	32	0	15	52	1.43
8108--8638	170	3.1	170	84	3	641	35	13	12	38	1.83
8857--8891	14	2.5	14	95	0	61	25	28	14	31	1.95
9664--10204	172	3.1	171	81	5	540	34	11	12	39	1.79
9664--10294	172	3.7	170	76	6	533	34	10	12	40	1.78
10925--12900	171	11.6	171	77	5	1654	34	13	12	38	1.82
10925--12890	342	5.8	340	81	4	1933	34	13	12	38	1.82
10925--12900	513	3.9	507	79	4	1821	34	13	12	38	1.82
13160--13490	169	1.9	171	82	6	413	38	16	10	35	1.83
14887--15917	170	6.0	170	78	5	881	37	11	14	35	1.81
14889--15917	341	3.0	338	80	3	1066	37	11	14	35	1.81
20162--21055	171	5.2	169	80	4	875	38	13	14	34	1.84
20162--21052	342	2.6	341	84	2	1090	38	13	13	34	1.84
21882--28031	171	36.1	170	79	4	5382	38	12	14	34	1.84

Tables:   1

The End!