genome.fa.s70.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397323.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_416.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65171

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346--1143	170	4.7	170	78	4	788	37	12	10	38	1.77
346--1143	341	2.3	339	84	4	1005	37	12	10	38	1.77
4462--4795	172	2.0	162	84	2	348	34	14	11	36	1.82
3991--5605	171	9.5	172	72	7	1081	34	13	10	36	1.80
4286--5605	340	3.9	337	77	5	1071	35	13	11	36	1.81
7486--7801	171	1.9	161	83	2	330	36	13	11	35	1.80
9056--10745	171	10.0	170	72	5	997	36	11	12	35	1.79
9066--10745	342	5.0	337	73	6	1196	37	11	12	35	1.79
13029--14568	171	9.0	171	77	3	1114	35	13	10	37	1.80
13029--14553	515	3.0	512	77	3	1319	35	13	10	37	1.80
13029--14553	341	4.5	340	75	5	1110	35	13	10	37	1.80
15772--16302	171	3.1	170	78	1	596	35	11	12	37	1.80
18010--18448	171	2.6	171	82	4	544	43	9	11	35	1.74
21732--22116	172	2.2	171	82	3	450	36	11	13	35	1.81
23798--25858	171	12.1	169	79	5	1947	36	13	10	38	1.80
23798--25855	341	6.0	342	82	4	2100	36	13	10	38	1.80
26193--27607	171	8.3	171	82	3	1351	35	14	11	36	1.83
27978--31393	171	20.0	171	81	4	3326	36	13	11	37	1.81
27978--31377	343	9.9	343	81	3	3535	36	13	11	37	1.81
32479--32801	171	1.9	171	87	0	475	36	12	9	41	1.76
32961--34223	171	7.4	171	81	6	1348	37	14	11	36	1.83
34980--36765	172	10.4	172	76	2	1437	34	13	11	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34980--36765	343	5.2	342	78	3	1568	34	13	11	37	1.80
35203--36765	686	2.3	685	81	1	1779	35	13	11	38	1.80
38288--38727	170	2.6	171	79	5	478	36	15	12	35	1.85
38195--39267	171	6.3	172	73	4	720	34	13	10	36	1.80
39636--42744	171	18.3	170	74	7	1588	34	13	11	36	1.80
41343--41641	147	2.0	147	83	5	381	34	15	10	40	1.80
41971--42748	172	4.5	172	78	6	712	36	13	11	36	1.82
42005--42651	350	1.8	350	80	4	786	36	12	10	39	1.77
42769--43218	171	2.6	170	85	2	591	36	13	12	36	1.84
43232--50335	171	41.4	169	71	8	2924	35	12	11	36	1.79
42769--50341	853	8.8	842	73	7	3497	35	12	11	36	1.80
43249--50335	341	20.7	339	72	6	3410	35	12	11	36	1.79
46363--50335	512	7.8	509	76	5	3091	36	13	11	37	1.80
42769--50335	683	11.1	684	73	6	3950	35	12	11	36	1.80
50786--51201	171	2.5	161	80	7	412	38	14	12	31	1.84
52649--53273	171	3.8	160	81	6	559	36	12	13	37	1.82
52805--53273	171	2.7	167	84	5	591	37	11	12	38	1.80
52305--53218	500	1.8	501	83	4	1209	36	12	11	39	1.79
52144--53278	342	3.4	336	78	8	1178	37	12	11	38	1.80
54160--54598	172	2.6	172	78	3	436	39	9	11	37	1.74
55155--55480	171	2.0	159	84	1	330	37	10	14	30	1.81
56744--57073	172	2.0	160	79	10	351	37	13	9	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55918--57682	171	10.3	170	73	4	955	35	12	10	35	1.78
58124--59070	171	5.5	168	74	5	702	33	13	11	38	1.81
59367--59833	171	2.7	170	84	3	571	36	13	13	37	1.83
59934--65171	171	30.9	171	76	5	4000	35	12	11	37	1.79
59934--65168	682	7.7	670	76	8	2850	35	12	11	37	1.79

Tables:   1

The End!