genome.fa.s71.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397324.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1266.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64571

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132--4384	171	25.0	171	78	5	3600	38	13	13	34	1.84
74--28009	682	40.8	678	72	9	9459	37	13	13	34	1.83
4383--8429	171	23.7	170	78	4	3192	38	13	13	34	1.83
4383--16841	342	36.4	340	72	9	6373	37	13	13	34	1.83
4383--31081	513	51.8	511	69	9	7772	37	12	13	34	1.83
8925--10155	171	7.2	168	76	6	969	38	12	13	35	1.83
9998--10277	150	1.9	150	87	1	418	40	12	12	34	1.82
10148--11157	171	5.9	168	78	4	979	38	14	12	34	1.83
10997--11308	151	2.1	150	84	2	394	39	11	14	31	1.82
11393--11868	170	2.8	169	83	4	582	36	13	13	36	1.84
11537--12268	400	1.8	398	81	4	909	36	12	14	36	1.85
12405--12680	151	1.8	151	86	3	403	40	11	12	35	1.79
12089--13566	512	3.0	492	76	8	1067	39	12	13	34	1.82
12574--16861	171	25.0	171	76	7	3051	38	13	13	35	1.83
12574--16861	341	12.5	341	76	6	3256	38	13	13	35	1.83
14180--14563	198	1.9	198	84	3	515	38	13	10	36	1.79
16734--17003	138	2.0	138	81	1	326	38	14	14	33	1.86
16555--17138	308	1.9	306	80	5	685	39	14	14	32	1.86
16216--17510	648	2.0	647	90	0	2054	37	13	13	35	1.85
16862--18114	170	7.4	170	77	4	1130	37	13	13	35	1.84
16871--27573	511	20.9	508	71	8	1910	36	13	13	34	1.83
18335--18954	171	3.6	168	77	7	565	39	13	12	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19070--19674	169	3.6	169	79	5	515	37	12	14	35	1.84
19070--24268	171	30.7	167	74	8	1288	37	13	13	35	1.84
19035--31081	340	35.1	340	71	8	4579	37	12	13	34	1.83
20141--20429	151	1.9	151	85	1	400	37	14	11	36	1.82
20300--24456	171	24.4	170	77	4	3226	37	13	13	34	1.84
24463--27476	170	17.7	168	75	6	2172	38	13	13	34	1.84
27549--27593	20	2.2	20	92	0	72	17	24	15	42	1.88
27663--28009	171	2.0	171	83	4	441	40	12	12	33	1.81
28483--31078	170	15.2	170	81	4	2365	38	12	13	35	1.83
20297--31078	341	31.3	337	72	7	4565	37	12	13	34	1.83
34313--34500	73	2.6	73	88	5	281	35	17	25	21	1.95
38776--38808	15	2.1	16	94	5	59	24	12	12	51	1.73
40755--40920	73	2.3	73	80	6	183	38	15	22	24	1.92
46899--46960	26	2.4	26	91	0	97	33	27	9	29	1.88
47847--47988	73	1.9	73	88	0	212	38	13	21	26	1.90
51211--51929	341	2.1	342	84	1	933	35	14	12	37	1.84
51211--51929	171	4.2	171	81	3	777	35	14	12	37	1.84
60374--61560	171	7.0	171	80	4	1326	35	14	12	37	1.84
60374--61560	506	2.3	511	81	4	1367	35	14	12	37	1.84

Tables:   1

The End!