genome.fa.s710.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397963.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_127.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43634

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480--944	170	2.7	170	82	3	531	31	10	14	41	1.80
1656--2606	343	2.8	341	79	4	869	34	14	11	39	1.83
1650--2606	171	5.6	168	78	5	757	34	14	12	39	1.83
3287--4008	171	4.2	171	80	3	727	36	12	14	36	1.84
3287--4011	342	2.1	342	80	4	811	36	12	14	36	1.84
3411--4179	171	4.5	171	76	6	409	38	12	14	34	1.84
6568--8536	171	11.6	171	77	5	1536	35	12	12	38	1.82
6568--8541	342	5.8	339	79	6	1722	35	12	12	38	1.82
9568--14104	171	26.6	170	74	7	2839	34	13	12	39	1.82
9568--14064	342	13.2	341	76	6	3249	34	13	12	39	1.82
9568--16415	511	13.2	513	72	8	3153	34	12	12	38	1.81
14335--14396	30	2.1	30	96	0	115	25	8	6	59	1.50
14836--16406	171	9.2	169	74	5	1077	36	13	12	37	1.83
14829--16409	341	4.6	342	76	5	1249	36	13	12	37	1.83
14829--16406	512	3.1	510	84	2	2035	36	13	12	37	1.83
19554--19693	73	1.9	73	88	0	208	37	15	21	25	1.93
19524--19717	73	2.7	73	78	1	201	38	17	21	22	1.93
21415--21884	171	2.7	172	80	3	491	36	13	12	36	1.84
22018--22323	164	1.9	165	82	4	386	36	11	12	39	1.80
23273--23882	171	3.6	170	76	3	609	37	12	10	38	1.78
24551--24771	97	2.3	96	92	1	354	42	10	9	37	1.72
24887--26184	171	7.6	170	75	8	692	33	11	13	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24890--27953	341	9.1	338	74	9	1229	34	12	13	39	1.82
26203--27440	341	3.6	339	82	4	1383	34	13	13	39	1.84
26203--27954	171	10.3	170	75	5	1067	34	13	13	38	1.83
28041--28420	170	2.2	170	84	2	487	37	14	12	35	1.84
28041--28555	170	3.0	169	80	4	455	35	12	12	36	1.82
29840--33034	171	18.7	168	76	5	2335	35	13	12	38	1.83
29880--33034	854	3.7	846	79	5	2851	35	13	12	38	1.82
34950--35605	171	3.8	171	78	5	643	35	13	13	37	1.84
34950--35594	342	1.9	341	82	5	802	34	13	12	38	1.84
36396--36532	73	1.9	73	83	6	179	24	19	16	38	1.92
36805--38025	171	7.1	170	77	3	923	33	12	12	39	1.81
36806--37750	342	2.8	341	81	1	1016	33	12	12	40	1.79
36809--37750	513	1.8	512	80	2	1136	33	12	12	40	1.80
38705--40073	171	8.0	170	77	4	1150	33	11	13	41	1.81
38862--40073	341	3.5	339	79	5	1005	33	11	13	41	1.81
40468--43634	171	18.6	171	76	6	2418	40	12	11	34	1.80
40501--43496	512	5.9	504	74	10	1435	40	12	11	34	1.80

Tables:   1

The End!