genome.fa.s72.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397325.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_63.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64570

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296--1787	170	8.7	170	72	8	909	34	13	12	37	1.82
296--1783	342	4.4	339	76	7	1168	34	13	12	37	1.82
1124--1153	10	3.0	10	100	0	60	20	0	0	80	0.72
2041--4766	171	16.0	170	71	4	1457	33	12	11	36	1.80
4246--4573	169	2.0	159	86	1	379	36	11	12	36	1.79
4425--4750	169	2.0	159	80	5	364	34	13	12	36	1.83
7192--7517	165	2.0	157	77	14	306	35	13	12	35	1.83
7359--14182	171	40.0	170	74	7	3961	38	11	12	34	1.81
6845--14182	341	21.5	339	75	6	4604	38	11	12	34	1.81
14815--14856	21	2.0	21	100	0	84	28	23	4	42	1.74
14828--18209	171	19.8	170	75	4	2182	38	11	12	34	1.80
17715--17754	21	1.9	21	85	10	55	32	20	7	40	1.80
19253--19282	10	3.0	10	100	0	60	40	10	10	40	1.72
19193--19349	85	1.8	85	88	0	242	30	16	11	41	1.84
19194--19368	85	2.1	85	84	0	224	32	16	10	40	1.83
19021--19519	256	1.9	255	78	5	531	35	12	14	35	1.84
19278--20729	341	4.3	339	81	4	1506	38	11	13	36	1.81
19278--20730	171	8.5	171	79	3	1383	38	11	13	36	1.81
19418--20684	680	1.9	680	81	3	1555	38	11	14	36	1.82
19278--20726	680	2.1	680	80	4	1544	38	11	13	36	1.81
19278--20730	512	2.8	504	78	5	1569	38	11	13	36	1.81
20898--21257	164	2.1	168	81	7	412	35	14	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21544--25952	171	26.0	169	79	5	3775	38	12	13	35	1.82
21544--33016	342	33.5	339	71	8	4567	37	11	13	34	1.81
25303--25607	157	1.9	156	84	4	400	36	14	13	36	1.84
26215--26467	128	2.0	128	85	3	339	34	15	15	35	1.89
26787--28724	171	11.3	171	77	4	1726	38	12	13	35	1.83
28602--28871	147	1.8	147	83	1	353	36	11	16	35	1.85
28723--33016	171	25.3	167	78	8	3486	38	11	13	35	1.82
33117--35518	171	14.1	171	76	6	1864	39	11	13	35	1.81
33295--35518	685	3.3	675	76	7	1595	39	11	12	35	1.81
35573--35995	171	2.5	169	80	6	410	37	13	13	35	1.84
36274--37443	170	6.8	170	79	6	1112	38	10	14	36	1.81
37544--39976	171	14.3	170	79	5	2214	35	13	12	38	1.82
37544--39976	341	7.1	339	79	5	2266	35	13	12	38	1.82
40336--40941	170	3.6	168	79	2	579	34	13	13	36	1.84
41078--41460	170	2.3	169	80	8	420	36	13	13	36	1.84
42303--43789	171	8.8	169	73	8	999	37	11	13	34	1.82
44322--45856	170	9.1	170	77	8	1420	37	12	13	35	1.83
44322--45856	341	4.5	338	80	7	1564	37	12	13	35	1.83
44324--45833	511	3.0	512	83	5	1736	37	12	13	35	1.83
45158--45817	169	4.0	159	73	13	453	38	12	13	35	1.82
45735--45982	123	2.0	124	85	2	338	46	8	12	32	1.71
45859--46513	171	3.8	170	77	8	616	38	11	13	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47126--47664	171	3.2	170	76	8	493	35	13	10	38	1.79
48549--49143	169	3.5	168	74	6	436	33	13	12	36	1.84
49083--49208	65	1.9	65	88	3	191	30	10	9	50	1.68
48921--49373	235	1.9	234	85	5	621	33	13	12	39	1.83
49148--49839	170	4.1	171	81	3	745	35	13	12	38	1.82
49148--49839	341	2.0	340	84	1	895	35	13	12	38	1.82
49737--49953	116	1.9	116	84	1	292	37	16	14	31	1.89
49418--50289	450	1.9	453	81	5	1039	36	13	13	36	1.85
49851--52333	171	14.6	170	80	5	2484	35	13	13	37	1.84
49851--52528	343	7.9	341	82	5	2718	35	13	12	37	1.83
52926--53309	171	2.3	170	85	5	499	38	12	11	37	1.80
53601--55016	171	8.3	170	78	4	1206	35	12	12	38	1.81
53568--56837	341	9.7	338	77	6	2577	35	13	11	39	1.81
53575--56864	512	6.5	508	79	6	2941	35	13	11	38	1.81
55037--56864	171	10.8	168	77	6	1507	36	13	11	38	1.81
58210--58519	171	1.9	161	85	2	345	32	10	16	37	1.83
58409--58879	164	2.9	158	76	13	375	35	11	14	34	1.82
59184--60333	171	6.8	170	72	6	681	35	12	13	34	1.82
59652--59969	169	1.9	161	80	9	356	35	10	15	35	1.82
61274--61895	171	3.7	165	79	6	569	35	14	13	35	1.86
62911--63410	171	2.9	170	74	8	419	36	13	12	36	1.82
64208--64541	171	2.0	159	77	9	231	35	15	12	34	1.85

Tables:   1

The End!