genome.fa.s73.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397326.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_511.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64298

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3146--3486	189	1.8	188	81	3	434	36	12	15	36	1.85
3302--5740	171	14.2	171	75	5	1516	37	12	14	34	1.84
2887--5836	685	4.3	680	76	4	2542	36	12	14	34	1.84
2940--5836	514	5.6	511	75	6	2311	37	12	14	34	1.84
6311--6837	169	3.1	168	80	6	550	38	11	14	35	1.83
8359--9856	171	8.8	171	81	3	1606	38	12	15	34	1.85
9957--11440	171	8.6	170	74	9	1043	34	15	12	37	1.85
10526--10581	21	2.7	21	94	0	94	51	17	7	23	1.70
13510--15005	170	8.8	169	81	5	1622	33	15	12	38	1.85
16088--16802	169	4.2	168	77	2	658	33	14	12	36	1.85
17453--20926	171	20.6	170	78	7	3175	38	12	15	34	1.85
17453--20926	341	10.3	342	77	9	2948	38	12	15	34	1.85
22491--24139	171	9.7	169	81	4	1704	34	14	12	37	1.84
22483--24114	682	2.4	679	83	3	1949	34	15	12	37	1.84
24374--25020	170	3.8	168	81	4	694	35	14	12	37	1.83
25533--26022	169	2.9	168	84	3	572	32	13	13	40	1.84
26234--28530	171	13.5	170	77	4	1806	33	14	13	37	1.85
26234--28522	170	13.4	171	77	4	1848	33	14	13	37	1.85
26234--29288	342	9.0	338	76	6	2402	33	15	13	37	1.86
28385--28680	150	2.0	150	85	5	402	36	12	12	38	1.82
28535--29288	171	4.4	171	81	4	754	34	16	12	35	1.88
30161--31511	170	7.9	172	72	6	510	37	11	13	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30273--30598	172	1.9	172	81	0	391	36	11	13	35	1.81
30839--31761	170	5.4	170	76	2	708	37	11	13	33	1.81
32160--33702	171	9.1	168	76	7	1170	37	12	15	34	1.85
34103--34672	172	3.3	172	81	2	637	37	11	13	37	1.81
34805--35545	170	4.3	169	82	5	832	37	11	14	36	1.82
35790--37204	170	8.3	170	80	6	1370	37	12	15	34	1.85
38559--38981	171	2.5	169	80	5	424	34	17	10	35	1.84
41184--43565	171	14.0	169	80	5	2275	33	15	12	38	1.85
41783--41824	22	1.9	22	95	0	75	26	2	11	59	1.45
41175--44152	682	4.4	680	83	6	3280	34	14	12	38	1.85
43420--43713	150	2.0	149	80	4	333	32	14	11	40	1.83
43856--44228	170	2.2	170	86	2	498	35	15	12	36	1.85
45547--46343	171	4.6	170	73	10	578	37	14	12	35	1.85
46052--46085	16	2.1	16	88	0	50	52	0	11	35	1.38
46374--50329	171	23.2	169	81	4	3825	34	15	12	36	1.86
50512--52813	171	13.6	170	75	7	1617	34	14	12	37	1.84
52939--55183	171	13.1	170	83	3	2280	37	13	14	34	1.85
55792--57415	172	9.4	171	75	5	1175	36	12	15	33	1.85
57451--57518	34	2.0	34	100	0	136	41	26	5	26	1.78
58394--59177	171	4.6	169	79	5	754	34	15	11	37	1.85
59825--59858	16	2.1	16	94	0	59	55	0	11	32	1.36

Tables:   1

The End!