genome.fa.s75.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397328.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_329.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62021

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690--716	11	2.5	11	100	0	54	7	18	18	55	1.65
1424--7375	170	35.0	170	79	5	5500	33	13	14	38	1.84
1424--7375	341	17.5	341	79	5	5546	33	13	14	38	1.84
7478--17841	171	60.1	169	74	10	6292	38	13	13	33	1.85
9905--10201	150	2.0	150	86	4	420	41	13	12	32	1.83
11770--12226	238	1.9	237	82	4	573	35	17	14	32	1.90
15536--15576	20	2.0	20	85	4	55	48	4	12	34	1.62
19351--19378	13	2.2	13	100	0	56	35	28	0	35	1.58
24651--24723	32	2.3	32	95	0	128	35	6	23	34	1.81
25253--26423	341	3.4	338	85	4	1440	39	12	13	35	1.82
25253--26427	170	6.9	170	82	3	1301	38	12	13	35	1.82
28380--33883	171	32.0	171	74	8	3549	32	13	13	38	1.83
28382--33883	512	10.7	511	76	7	4319	32	13	13	38	1.83
28382--33893	341	16.0	340	76	6	4207	32	13	13	38	1.83
34632--34828	73	2.7	73	78	4	209	24	22	14	38	1.92
41016--54334	171	77.4	170	74	7	6880	32	13	13	36	1.84
41016--55355	513	27.9	509	72	7	7789	32	13	13	36	1.84
54210--54465	130	2.0	130	82	1	316	39	18	11	30	1.86
54336--55355	171	6.0	171	83	3	1151	33	14	13	37	1.86
55365--62021	171	39.0	170	81	4	6842	39	14	13	32	1.85
55365--62021	341	19.5	341	81	3	6890	39	14	13	32	1.85

Tables:   1

The End!