genome.fa.s76.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397329.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_33.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60246

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180--474	155	1.9	156	81	7	359	36	11	12	40	1.79
6--633	326	1.9	326	80	4	739	36	11	12	39	1.80
942--5064	171	24.2	169	75	6	2893	33	13	13	39	1.83
150--1327	605	1.9	603	80	5	1340	34	12	12	39	1.81
943--5064	341	12.1	338	76	6	2993	33	13	13	39	1.83
4072--4715	177	3.8	168	75	11	414	34	16	12	36	1.87
8799--9393	172	3.5	170	75	10	479	40	12	13	33	1.82
9617--9889	148	1.9	147	84	2	368	41	11	11	35	1.77
9764--10769	170	5.9	169	78	8	968	37	13	13	34	1.85
9744--10769	340	3.0	335	82	7	1071	37	13	13	35	1.85
9744--10769	511	2.0	510	84	6	1335	37	13	13	35	1.85
12817--12985	35	4.8	35	82	2	203	33	7	15	43	1.75
12817--12984	71	2.4	70	82	4	194	33	7	14	44	1.74
14683--14829	73	2.0	72	85	3	197	25	19	17	38	1.93
17531--17557	14	1.9	14	100	0	54	29	22	7	40	1.81
19839--20052	35	6.2	35	82	4	240	35	7	12	45	1.69
19868--20079	70	3.0	70	81	2	273	35	7	12	44	1.70
19855--20052	105	1.9	107	84	2	274	35	7	12	44	1.71
24686--24943	73	3.5	73	80	5	279	27	20	13	37	1.91
26983--27030	25	2.0	24	84	12	62	22	4	0	72	1.01
29842--29868	7	3.9	7	100	0	54	74	0	14	11	1.08
34861--35403	172	3.2	170	82	5	664	41	11	12	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35254--35292	21	1.9	21	89	5	62	25	17	12	43	1.85
43377--43561	73	2.5	73	76	1	183	35	19	22	23	1.96
43874--44328	228	2.0	228	92	2	754	28	11	25	34	1.91
45087--45490	170	2.4	170	78	6	422	37	15	12	34	1.85
45440--45478	21	1.9	20	84	5	51	41	17	12	28	1.87
45778--46375	171	3.5	169	78	7	503	34	13	13	36	1.84
48218--52477	171	24.6	171	70	10	1837	34	13	13	38	1.84
48218--49801	341	4.7	340	78	6	1371	34	13	13	38	1.84
52583--53232	171	3.8	168	81	4	624	35	14	12	37	1.83
53162--53306	74	2.0	74	82	5	177	32	19	11	37	1.87
52989--53477	245	2.0	245	81	1	568	33	15	13	37	1.86
53233--59566	171	36.7	169	73	8	3231	34	12	12	38	1.82
52817--53647	416	2.0	414	81	4	967	33	14	13	38	1.85
53250--57299	514	7.9	503	75	7	2369	34	13	12	38	1.82
53233--59566	341	18.3	341	72	10	2767	34	12	12	38	1.82
57358--57492	71	1.9	71	84	3	182	32	15	10	41	1.81
57195--57664	239	2.0	241	80	6	544	34	12	11	40	1.80
57429--59532	339	6.2	339	78	7	1672	35	12	12	39	1.82
57438--59548	679	3.1	678	80	7	2013	35	12	12	39	1.82

Tables:   1

The End!