genome.fa.s765.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398018.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1325.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14841

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1150--1464	172	1.8	171	82	4	402	36	13	13	36	1.84
3145--4083	172	5.5	172	71	3	694	34	13	12	34	1.82
4773--5144	170	2.2	171	78	10	411	37	12	13	36	1.84
6677--7996	172	7.7	171	79	3	1180	36	13	12	35	1.82
6807--7996	344	3.5	344	82	3	1354	36	13	12	36	1.82
6677--7996	516	2.6	515	81	2	1376	36	13	12	35	1.82
12164--13569	172	8.2	170	78	6	1308	35	13	12	37	1.83
12157--13580	510	2.8	512	83	4	1660	35	13	12	38	1.83

Tables:   1

The End!